7WNS | pdb_00007wns

Crystal structure of ENF peptide binding protein from Silkworm

PDB DOI: https://doi.org/10.2210/pdb7WNS/pdb

Classification: PEPTIDE BINDING PROTEIN
Organism(s): Bombyx mori
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2022-01-19 Released: 2023-01-25
Deposition Author(s): Guo, P.C., Zhang, H.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.80 Å
R-Value Free:
0.185 (Depositor), 0.200 (DCC)
R-Value Work:
0.173 (Depositor), 0.180 (DCC)

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Crysatl structure of ENF-peptide binding protein from silkworm, Bombyx mori.

Guo, P.C., Zhang, H.

To be published.

Macromolecule Content

Total Structure Weight: 50.85 kDa
Atom Count: 3,902
Modeled Residue Count: 424
Deposited Residue Count: 444
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
30K protein 12	A	444	Bombyx mori	Mutation(s): 0 Gene Names: 101739532
UniProt
Find proteins for H9B445 (Bombyx mori) Explore H9B445 Go to UniProtKB: H9B445
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	H9B445
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.80 Å
R-Value Free: 0.185 (Depositor), 0.200 (DCC)
R-Value Work: 0.173 (Depositor), 0.180 (DCC)

Space Group: C 2 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 54.477	α = 90
b = 121.692	β = 90
c = 253.769	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-3000	data reduction
SCALA	data scaling
AutoSol	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2023-01-25

Deposition Author(s):

Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	31970468
National Natural Science Foundation of China (NSFC)	China	32030103

Revision History (Full details and data files)

Version 1.0: 2023-01-25
Type: Initial release
Version 1.1: 2024-05-29
Changes: Data collection

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.