7WEZ | pdb_00007wez

Crystal structure of RRM domain of Cyclophilin 33-like protein of Plasmodium falciparum

PDB DOI: https://doi.org/10.2210/pdb7WEZ/pdb

Classification: RNA BINDING PROTEIN
Organism(s): Plasmodium falciparum 3D7
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2021-12-24 Released: 2022-12-28
Deposition Author(s): Verma, G., Bhavesh, N.S.
Funding Organization(s): Other government

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.90 Å
R-Value Free:
0.276 (Depositor), 0.273 (DCC)
R-Value Work:
0.223 (Depositor), 0.229 (DCC)
R-Value Observed:
0.225 (Depositor)

Starting Model: experimental
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This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of RRM domain of Cyclophilin 33-like protein of Plasmodium falciparum

Verma, G., Bhavesh, N.S.

To be published.

Macromolecule Content

Total Structure Weight: 40.62 kDa
Atom Count: 2,625
Modeled Residue Count: 320
Deposited Residue Count: 356
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
RNA-binding protein, putative	A, B, C, D	89	Plasmodium falciparum 3D7	Mutation(s): 0 Gene Names: PF3D7_1320900
UniProt
Find proteins for C0H5C7 (Plasmodium falciparum (isolate 3D7)) Explore C0H5C7 Go to UniProtKB: C0H5C7
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	C0H5C7
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
MG Query on MG Download:Ideal Coordinates CCD File SDF format, chain E [auth A] MOL2 format, chain E [auth A] mmCIF format, chain E [auth A]	E [auth A]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N		Interactions Focus chain E [auth A] Interactions & Density Focus chain E [auth A]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.90 Å
R-Value Free: 0.276 (Depositor), 0.273 (DCC)
R-Value Work: 0.223 (Depositor), 0.229 (DCC)
R-Value Observed: 0.225 (Depositor)

Diffraction Data:

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 90.469	α = 90
b = 40.802	β = 115.57
c = 97.387	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
PDB_EXTRACT	data extraction
autoPROC	data reduction
autoPROC	data scaling
MOLREP	phasing

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2022-12-28

Deposition Author(s):

Funding Organization	Location	Grant Number
Other government		ICGEB New Delhi Core fund

Revision History (Full details and data files)

Version 1.0: 2022-12-28
Type: Initial release
Version 1.1: 2023-11-29
Changes: Data collection, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.