7WBN | pdb_00007wbn

PDB structure of RevCC


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 200 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the least restraint violations 

wwPDB Validation 3D Report Full Report

Validation slider image for 7WBN

This is version 1.1 of the entry. See complete history

Literature

Pseudo-Isolated alpha-Helix Platform for the Recognition of Deep and Narrow Targets.

Kim, D.I.Han, S.H.Park, H.Choi, S.Kaur, M.Hwang, E.Han, S.J.Ryu, J.Y.Cheong, H.K.Barnwal, R.P.Lim, Y.B.

(2022) J Am Chem Soc 144: 15519-15528

  • DOI: https://doi.org/10.1021/jacs.2c03858
  • Primary Citation Related Structures: 
    7WBN

  • PubMed Abstract: 

    Although interest in stabilized α-helical peptides as next-generation therapeutics for modulating biomolecular interfaces is increasing, peptides have limited functionality and stability due to their small size. In comparison, α-helical ligands based on proteins can make steric clash with targets due to their large size. Here, we report the design of a monomeric pseudo-isolated α-helix (mPIH) system in which proteins behave as if they are peptides. The designed proteins contain α-helix ligands that do not require any covalent chemical modification, do not have frayed ends, and importantly can make sterically favorable interactions similar to isolated peptides. An optimal mPIH showed a more than 100-fold increase in target selectivity, which might be related to the advantages in conformational selection due to the absence of frayed ends. The α-helical ligand in the mPIH displayed high thermal stability well above human body temperature and showed reversible and rapid folding/unfolding transitions. Thus, mPIH can become a promising protein-based platform for developing stabilized α-helix pharmaceuticals.


  • Organizational Affiliation
    • Department of Materials Science and Engineering, Yonsei University, Seoul 03722, Republic of Korea.

Macromolecule Content 

  • Total Structure Weight: 11.99 kDa 
  • Atom Count: 840 
  • Modeled Residue Count: 98 
  • Deposited Residue Count: 98 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
RevCC98Human immunodeficiency virus 1Mutation(s): 0 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 200 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the least restraint violations 

Structure Validation

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Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Research Foundation (NRF, Korea)Korea, Republic Of2020R1A2C2007578

Revision History  (Full details and data files)

  • Version 1.0: 2022-10-26
    Type: Initial release
  • Version 1.1: 2024-05-15
    Changes: Data collection, Database references