7W62 | pdb_00007w62

Mevo lectin complex with mannotetraose (Man4)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Free: 
    0.250 (Depositor), 0.253 (DCC) 
  • R-Value Work: 
    0.226 (Depositor), 0.231 (DCC) 

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

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This is version 1.1 of the entry. See complete history

Literature

Mevo lectin complex with mannotetraose (Man4)

Sivaji, N.Vijayan, M.

To be published.

Macromolecule Content 

  • Total Structure Weight: 230.42 kDa 
  • Atom Count: 16,060 
  • Modeled Residue Count: 1,962 
  • Deposited Residue Count: 2,030 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
lectin145Methanococcus voltae A3Mutation(s): 0 
Gene Names: Mvol_0737
UniProt
Find proteins for D7DTD6 (Methanococcus voltae (strain ATCC BAA-1334 / A3))
Explore D7DTD6 
Go to UniProtKB:  D7DTD6
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupD7DTD6
Sequence Annotations
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Reference Sequence

Oligosaccharides

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Entity ID: 2
MoleculeChains Length2D Diagram GlycosylationD Interactions
alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose
AA [auth a],
BA [auth b],
O,
P,
Q,
AA [auth a],
BA [auth b],
O,
P,
Q,
S,
U,
V,
W,
X,
Y,
Z
4N/A
Glycosylation Resources
GlyTouCan: G77865AH
GlyCosmos: G77865AH
GlyGen: G77865AH
Entity ID: 3
MoleculeChains Length2D Diagram GlycosylationD Interactions
alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose
R, T
3N/A
Glycosylation Resources
GlyTouCan: G25559RS
GlyCosmos: G25559RS
GlyGen: G25559RS

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Free:  0.250 (Depositor), 0.253 (DCC) 
  • R-Value Work:  0.226 (Depositor), 0.231 (DCC) 
Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 96.21α = 90
b = 168.3β = 90
c = 170.249γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
iMOSFLMdata reduction
SCALAdata scaling
PHASERphasing

Structure Validation

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Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Science and Engineering Research Board (SERB)India--

Revision History  (Full details and data files)

  • Version 1.0: 2023-01-18
    Type: Initial release
  • Version 1.1: 2023-11-29
    Changes: Data collection, Refinement description