7W41

Crystal Structure of Human Gastrin Releasing Peptide Receptor in complex with the antagonist PD176252


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.95 Å
  • R-Value Free: 0.321 
  • R-Value Work: 0.280 

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This is version 1.1 of the entry. See complete history


Literature

Structures of human gastrin-releasing peptide receptors bound to antagonist and agonist for cancer and itch therapy.

Peng, S.Zhan, Y.Zhang, D.Ren, L.Chen, A.Chen, Z.F.Zhang, H.

(2023) Proc Natl Acad Sci U S A 120: e2216230120-e2216230120

  • DOI: https://doi.org/10.1073/pnas.2216230120
  • Primary Citation of Related Structures:  
    7W3Z, 7W40, 7W41

  • PubMed Abstract: 

    Gastrin releasing peptide receptor (GRPR), a member of the bombesin (BBN) G protein-coupled receptors, is aberrantly overexpressed in several malignant tumors, including those of the breast, prostate, pancreas, lung, and central nervous system. Additionally, it also mediates non-histaminergic itch and pathological itch conditions in mice. Thus, GRPR could be an attractive target for cancer and itch therapy. Here, we report the inactive state crystal structure of human GRPR in complex with the non-peptide antagonist PD176252, as well as two active state cryo-electron microscopy (cryo-EM) structures of GRPR bound to the endogenous peptide agonist gastrin-releasing peptide and the synthetic BBN analog [D-Phe 6 , β-Ala 11 , Phe 13 , Nle 14 ] Bn (6-14), in complex with G q heterotrimers. These structures revealed the molecular mechanisms for the ligand binding, receptor activation, and G q proteins signaling of GRPR, which are expected to accelerate the structure-based design of GRPR antagonists and agonists for the treatments of cancer and pruritus.


  • Organizational Affiliation

    Hangzhou Institute of Innovative Medicine, Institute of Pharmacology and Toxicology, Zhejiang Province Key Laboratory of Anti-Cancer Drug Research, College of Pharmaceutical Sciences, Zhejiang University, Hangzhou, Zhejiang 310058, China.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Gastrin-releasing peptide receptor,GlgA glycogen synthase484Homo sapiensPyrococcus abyssi GE5Mutation(s): 3 
Gene Names: GRPRPAB2292
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for Q9V2J8 (Pyrococcus abyssi (strain GE5 / Orsay))
Explore Q9V2J8 
Go to UniProtKB:  Q9V2J8
Find proteins for P30550 (Homo sapiens)
Explore P30550 
Go to UniProtKB:  P30550
PHAROS:  P30550
GTEx:  ENSG00000126010 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupsQ9V2J8P30550
Sequence Annotations
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  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
8B8 (Subject of Investigation/LOI)
Query on 8B8

Download Ideal Coordinates CCD File 
B [auth A](2S)-3-(1H-indol-3-yl)-N-[[1-(5-methoxypyridin-2-yl)cyclohexyl]methyl]-2-methyl-2-[(4-nitrophenyl)carbamoylamino]propanamide
C32 H36 N6 O5
NNFUWNLENRUDHR-HKBQPEDESA-N
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.95 Å
  • R-Value Free: 0.321 
  • R-Value Work: 0.280 
  • Space Group: C 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 134.104α = 90
b = 60.025β = 113.573
c = 98.489γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
HKL-3000data reduction
HKL-3000data scaling
PHASERphasing

Structure Validation

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Ligand Structure Quality Assessment 


Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Ministry of Science and Technology (MoST, China)China2018YFA0508100
National Natural Science Foundation of China (NSFC)China81722044
National Natural Science Foundation of China (NSFC)China91753115
National Natural Science Foundation of China (NSFC)China21778049
National Natural Science Foundation of China (NSFC)China81861148018
Ministry of Science and Technology (MoST, China)China2018ZX09711002

Revision History  (Full details and data files)

  • Version 1.0: 2023-02-22
    Type: Initial release
  • Version 1.1: 2023-11-29
    Changes: Data collection, Refinement description