7W0J

Acyl-CoA dehydrogenase, Tfu_1647

• PDB DOI: https://doi.org/10.2210/pdb7W0J/pdb

• Classification: FLAVOPROTEIN
• Organism(s): Thermobifida fusca YX
• Expression System: Escherichia coli BL21
• Mutation(s): No 


• Deposited: 2021-11-18 Released: 2022-11-23 
• Deposition Author(s): Liu, L.X., Zhou, S.H., Deng, Y.
• Funding Organization(s): Not funded

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 3.13 Å
• R-Value Free: 0.270 
• R-Value Work: 0.215 
• R-Value Observed: 0.217 

Literature

Crystal structure of an Acyl-CoA dehydrogenase Tfu_1647

Liu, L.X., Zhou, S.H., Deng, Y.

To be published.

Biological Assembly 1  

Global Symmetry: Dihedral - D2  (Explore in 3D)
Global Stoichiometry: Homo 4-mer - A4 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: native gel electrophoresis

Biological Assembly 2  

Global Symmetry: Dihedral - D2  (Explore in 3D)
Global Stoichiometry: Homo 4-mer - A4 

Biological assembly 2 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 339.66 kDa 
• Atom Count: 23,345 
• Modelled Residue Count: 3,026 
• Deposited Residue Count: 3,080 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Acyl-CoA dehydrogenase	A, B [auth D], C [auth G], D [auth F], E [auth B], F [auth C], G [auth E], H	385	Thermobifida fusca YX	Mutation(s): 0  Gene Names: Tfu_1647 EC: 1.3.8
UniProt
Find proteins for A0A4D5XMK4 (Thermobifida fusca (strain YX)) Explore A0A4D5XMK4  Go to UniProtKB:  A0A4D5XMK4

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
875	I [auth E], J [auth E], K [auth H]	[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2R,3S,4S)-5-azanyl-2,3,4-tris(oxidanyl)pentyl] hydrogen phosphate C15 H26 N6 O13 P2 JFHZDRWPWXRIBP-AOOZFPJJSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 3.13 Å
• R-Value Free: 0.270 
• R-Value Work: 0.215 
• R-Value Observed: 0.217 
• Space Group: P 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 85.124	α = 90.19
b = 88.908	β = 91.93
c = 97.178	γ = 112.09

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-2000	data reduction
PDB_EXTRACT	data extraction
HKL-3000	data scaling
HKL-3000	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2022-11-23 
Deposition Author(s): Liu, L.X., Zhou, S.H., Deng, Y.

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Funding Organization	Location	Grant Number
Not funded		--

Revision History  

• Version 1.0: 2022-11-23
  Type: Initial release
  
• Version 1.1: 2023-11-29
  Changes: Data collection, Refinement description