7VUI

Cryo-EM structure of a class A orphan GPCR


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.30 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Molecular insights into ligand recognition and G protein coupling of the neuromodulatory orphan receptor GPR139.

Zhou, Y.Daver, H.Trapkov, B.Wu, L.Wu, M.Harpsoe, K.Gentry, P.R.Liu, K.Larionova, M.Liu, J.Chen, N.Brauner-Osborne, H.Gloriam, D.E.Hua, T.Liu, Z.J.

(2022) Cell Res 32: 210-213


Macromolecules
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Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Isoform Gnas-2 of Guanine nucleotide-binding protein G(s) subunit alpha isoforms shortA261Homo sapiensMutation(s): 4 
Gene Names: GNASGNAS1GSP
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for P63092 (Homo sapiens)
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Go to UniProtKB:  P63092
PHAROS:  P63092
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UniProt GroupP63092
Protein Feature View
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Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1B346Homo sapiensMutation(s): 0 
Gene Names: GNB1
UniProt & NIH Common Fund Data Resources
Find proteins for P62873 (Homo sapiens)
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PHAROS:  P62873
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UniProt GroupP62873
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Entity ID: 3
MoleculeChainsSequence LengthOrganismDetailsImage
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2C [auth G]71Homo sapiensMutation(s): 0 
Gene Names: GNG2
Membrane Entity: Yes 
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Find proteins for P59768 (Homo sapiens)
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UniProt GroupP59768
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Entity ID: 4
MoleculeChainsSequence LengthOrganismDetailsImage
Nanobody 35D [auth N]157Homo sapiensMutation(s): 0 
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Entity ID: 5
MoleculeChainsSequence LengthOrganismDetailsImage
Chimera of Endo-1,4-beta-xylanase and Probable G-protein coupled receptor 139E [auth R]533Niallia circulansHomo sapiens
This entity is chimeric
Mutation(s): 3 
Gene Names: xlnAGPR139GPRG1PGR3
EC: 3.2.1.8
Membrane Entity: Yes 
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PHAROS:  Q6DWJ6
Find proteins for P09850 (Niallia circulans)
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Go to UniProtKB:  P09850
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UniProt GroupsQ6DWJ6P09850
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Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GTP (Subject of Investigation/LOI)
Query on GTP

Download Ideal Coordinates CCD File 
F [auth A]GUANOSINE-5'-TRIPHOSPHATE
C10 H16 N5 O14 P3
XKMLYUALXHKNFT-UUOKFMHZSA-N
 Ligand Interaction
7ZQ (Subject of Investigation/LOI)
Query on 7ZQ

Download Ideal Coordinates CCD File 
H [auth R]3-chloranyl-N-[2-oxidanylidene-2-[[(1S)-1-phenylethyl]amino]ethyl]benzamide
C17 H17 Cl N2 O2
MWDVCHRYCKXEBY-LBPRGKRZSA-N
 Ligand Interaction
MG
Query on MG

Download Ideal Coordinates CCD File 
G [auth A]MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.30 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
IMAGE ACQUISITIONSerialEM--

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Science Foundation (NSF, China)China--

Revision History  (Full details and data files)

  • Version 1.0: 2021-12-29
    Type: Initial release
  • Version 1.1: 2022-02-16
    Changes: Database references