7VR2 | pdb_00007vr2

Crystal structure of (-)-pulegone reductase PR1292 from Nepeta tenuifolia

• PDB DOI: https://doi.org/10.2210/pdb7VR2/pdb

• Classification: PLANT PROTEIN
• Organism(s): Schizonepeta tenuifolia
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2021-10-21 Released: 2022-10-26 
• Deposition Author(s): Lin, W., Wang, W.W.
• Funding Organization(s): National Natural Science Foundation of China (NSFC)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.40 Å
• R-Value Free: 
  0.256 (Depositor), 0.260 (DCC) 
• R-Value Work: 
  0.206 (Depositor), 0.210 (DCC) 
• R-Value Observed: 
  0.209 (Depositor) 

Starting Model: experimental

Literature

Crystal structure of (-)-pulegone reductase PR1292 from Nepeta tenuifolia

Lin, W., Wang, W.W.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: gel filtration

Macromolecule Content 

• Total Structure Weight: 76.5 kDa 
• Atom Count: 5,430 
• Modeled Residue Count: 674 
• Deposited Residue Count: 688 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
(-)-pulegone reductase PR1292 from Nepeta tenuifolia	A, B	344	Schizonepeta tenuifolia	Mutation(s): 0
UniProt
Find proteins for A0A9X9ZA46 (Schizonepeta tenuifolia) Explore A0A9X9ZA46  Go to UniProtKB:  A0A9X9ZA46

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.40 Å
• R-Value Free:  0.256 (Depositor), 0.260 (DCC) 
• R-Value Work:  0.206 (Depositor), 0.210 (DCC) 
• R-Value Observed: 0.209 (Depositor) 

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 65.609	α = 90
b = 70.863	β = 100.56
c = 81.191	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
Aimless	data scaling
PDB_EXTRACT	data extraction
HKL-2000	data reduction
PHENIX	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2022-10-26 
Deposition Author(s): Lin, W., Wang, W.W.

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Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	--

Revision History  

• Version 1.0: 2022-10-26
  Type: Initial release
  
• Version 1.1: 2023-11-29
  Changes: Data collection, Refinement description