7VO5

Pimaricin type I PKS thioesterase domain (holo Pim TE)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.40 Å
  • R-Value Free: 0.232 
  • R-Value Work: 0.202 
  • R-Value Observed: 0.203 

wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 


This is version 1.0 of the entry. See complete history


Literature

Structural and Mechanistic Insights into Chain Release of the Polyene PKS Thioesterase Domain

Zhou, Y.Tao, W.Qi, Z.Wei, J.Shi, T.Kang, Q.Zheng, J.Zhao, Y.Bai, L.

(2022) ACS Catal 12: 762-776


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
ScnS4A286Streptomyces chattanoogensisMutation(s): 0 
Gene Names: scnS4
UniProt
Find proteins for F1CLA7 (Streptomyces chattanoogensis)
Explore F1CLA7 
Go to UniProtKB:  F1CLA7
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupF1CLA7
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
81E (Subject of Investigation/LOI)
Query on 81E

Download Ideal Coordinates CCD File 
B [auth A](1R,3S,5E,7S,11R,13E,15E,17E,19E,21R,23S,24R,25S)-11,24-dimethyl-1,3,7,21,25-pentakis(oxidanyl)-10,27-dioxabicyclo[21.3.1]heptacosa-5,13,15,17,19-pentaen-9-one
C27 H40 O8
HPNUEFYWFLZIDL-RYQDMBGZSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.40 Å
  • R-Value Free: 0.232 
  • R-Value Work: 0.202 
  • R-Value Observed: 0.203 
  • Space Group: P 64
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 95.449α = 90
b = 95.449β = 90
c = 102.708γ = 120
Software Package:
Software NamePurpose
REFMACrefinement
HKL-2000data scaling
PDB_EXTRACTdata extraction
HKL-2000data reduction
PHASERphasing

Structure Validation

View Full Validation Report



Ligand Structure Quality Assessment 


Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Not fundedChina--

Revision History  (Full details and data files)

  • Version 1.0: 2022-01-19
    Type: Initial release