7VKJ | pdb_00007vkj

Structure of ESRP1 qRRM3 domain

PDB DOI: https://doi.org/10.2210/pdb7VKJ/pdb

Classification: RNA BINDING PROTEIN
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2021-09-30 Released: 2022-10-05
Deposition Author(s): Wu, B.X., Patel, D.J.
Funding Organization(s): Not funded

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.45 Å
R-Value Free:
0.190 (Depositor), 0.191 (DCC)
R-Value Work:
0.171 (Depositor), 0.171 (DCC)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Validation slider image for 7VKJ

This is version 1.1 of the entry. See complete history.

Literature

Structure of ESRP1 qRRM3 domain

Wu, B.X., Patel, D.J.

To be published.

Macromolecule Content

Total Structure Weight: 99.88 kDa
Atom Count: 7,513
Modeled Residue Count: 829
Deposited Residue Count: 880
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Epithelial splicing regulatory protein 1	A, B, C, D, E A, B, C, D, E, F, G, H	110	Homo sapiens	Mutation(s): 0 Gene Names: ESRP1, RBM35A
UniProt & NIH Common Fund Data Resources
Find proteins for Q6NXG1 (Homo sapiens) Explore Q6NXG1 Go to UniProtKB: Q6NXG1
PHAROS: Q6NXG1 GTEx: ENSG00000104413
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q6NXG1
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.45 Å
R-Value Free: 0.190 (Depositor), 0.191 (DCC)
R-Value Work: 0.171 (Depositor), 0.171 (DCC)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 89.572	α = 90
b = 102.813	β = 90
c = 107.141	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-3000	data reduction
HKL-3000	data scaling
PHASER	phasing

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2022-10-05

Deposition Author(s):

Funding Organization	Location	Grant Number
Not funded		--

Revision History (Full details and data files)

Version 1.0: 2022-10-05
Type: Initial release
Version 1.1: 2023-11-29
Changes: Data collection, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.