7VIV | pdb_00007viv

Crystal structure of the I73R from African Swine Fever Virus

PDB DOI: https://doi.org/10.2210/pdb7VIV/pdb

Classification: VIRAL PROTEIN
Organism(s): African swine fever virus
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2021-09-28 Released: 2022-09-07
Deposition Author(s): Sun, L.F., Wu, Y.K.
Funding Organization(s): Other government

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free:
0.223 (Depositor), 0.240 (DCC)
R-Value Work:
0.185 (Depositor), 0.200 (DCC)
R-Value Observed:
0.187 (Depositor)

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Structural insight into African Swine Fever Virus I73R protein reveals it is a Z-DNA binding protein

Sun, L.F.

To be published.

Macromolecule Content

Total Structure Weight: 16.81 kDa
Atom Count: 1,244
Modeled Residue Count: 144
Deposited Residue Count: 144
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
I73R	A, B	72	African swine fever virus	Mutation(s): 0 Gene Names: I73R CDS, I73R, ASFV-Georgia_4-163, ASFV_Kyiv_2016_131_00219
UniProt
Find proteins for A0A2X0RU36 (African swine fever virus) Explore A0A2X0RU36 Go to UniProtKB: A0A2X0RU36
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A2X0RU36
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free: 0.223 (Depositor), 0.240 (DCC)
R-Value Work: 0.185 (Depositor), 0.200 (DCC)
R-Value Observed: 0.187 (Depositor)

Space Group: H 3

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 89.36	α = 90
b = 89.36	β = 90
c = 46.16	γ = 120

Software Package:

Software Name	Purpose
Aimless	data scaling
PHENIX	refinement
PDB_EXTRACT	data extraction
HKL-2000	data reduction
PHENIX	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2022-09-07

Deposition Author(s):

Funding Organization	Location	Grant Number
Other government	China	Z0210509

Revision History (Full details and data files)

Version 1.0: 2022-09-07
Type: Initial release
Version 1.1: 2024-05-29
Changes: Data collection

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.