7VC9 | pdb_00007vc9

Tom20 subunits

  • Classification: TRANSLOCASE
  • Organism(s): Homo sapiens
  • Expression System: Homo sapiens
  • Mutation(s): No 

  • Deposited: 2021-09-02 Released: 2022-09-07 
  • Deposition Author(s): Liu, D.S., Sui, S.F.
  • Funding Organization(s): National Basic Research Program of China (973 Program)

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 13.0 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Structural basis of Tom20 and Tom22 cytosolic domains as the human TOM complex receptors.

Su, J.Liu, D.Yang, F.Zuo, M.Q.Li, C.Dong, M.Q.Sun, S.Sui, S.F.

(2022) Proc Natl Acad Sci U S A 119: e2200158119-e2200158119

  • DOI: https://doi.org/10.1073/pnas.2200158119
  • Primary Citation of Related Structures:  
    7VC9, 7VD2, 7VDD

  • PubMed Abstract: 

    Mitochondrial preproteins synthesized in cytosol are imported into mitochondria by a multisubunit translocase of the outer membrane (TOM) complex. Functioned as the receptor, the TOM complex components, Tom 20, Tom22, and Tom70, recognize the presequence and further guide the protein translocation. Their deficiency has been linked with neurodegenerative diseases and cardiac pathology. Although several structures of the TOM complex have been reported by cryoelectron microscopy (cryo-EM), how Tom22 and Tom20 function as TOM receptors remains elusive. Here we determined the structure of TOM core complex at 2.53 Å and captured the structure of the TOM complex containing Tom22 and Tom20 cytosolic domains at 3.74 Å. Structural analysis indicates that Tom20 and Tom22 share a similar three-helix bundle structural feature in the cytosolic domain. Further structure-guided biochemical analysis reveals that the Tom22 cytosolic domain is responsible for binding to the presequence, and the helix H1 is critical for this binding. Altogether, our results provide insights into the functional mechanism of the TOM complex recognizing and transferring preproteins across the mitochondrial membrane.


  • Organizational Affiliation
    • State Key Laboratory of Membrane Biology, Beijing Advanced Innovation Center for Structural Biology, Beijing Frontier Research Center for Biological Structure, School of Life Sciences, Tsinghua University, 100084, Beijing, China.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Mitochondrial import receptor subunit TOM20 homologA [auth M],
B [auth N]
145Homo sapiensMutation(s): 0 
Gene Names: TOMM20KIAA0016
UniProt & NIH Common Fund Data Resources
Find proteins for Q15388 (Homo sapiens)
Explore Q15388 
Go to UniProtKB:  Q15388
PHAROS:  Q15388
GTEx:  ENSG00000173726 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ15388
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 13.0 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Basic Research Program of China (973 Program)China--

Revision History  (Full details and data files)

  • Version 1.0: 2022-09-07
    Type: Initial release
  • Version 1.1: 2024-06-19
    Changes: Data collection
  • Version 1.2: 2024-09-04
    Changes: Data collection, Database references
  • Version 1.3: 2025-07-02
    Changes: Data collection, Structure summary