7UVP | pdb_00007uvp

Cryo-EM structure of the ribosome-bound Bacteroides thetaiotaomicron EF-G2

• PDB DOI: https://doi.org/10.2210/pdb7UVP/pdb
• EM Map EMD-26815: EMDB EMDataResource

• Classification: TRANSLATION
• Organism(s): Bacteroides thetaiotaomicron VPI-5482
• Expression System: Escherichia coli 'BL21-Gold(DE3)pLysS AG
• Mutation(s): No 


• Deposited: 2022-05-02 Released: 2023-05-10 
• Deposition Author(s): Wang, C., Han, W., Groisman, E.A., Liu, J.
• Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 3.70 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Literature

Cryo-EM structure of the ribosome-bound Bacteroides thetaiotaomicron EF-G2

Wang, C., Han, W., Groisman, E.A.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: electron microscopy

Macromolecule Content 

• Total Structure Weight: 80.9 kDa 
• Atom Count: 5,671 
• Modeled Residue Count: 718 
• Deposited Residue Count: 718 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Tetracycline resistance protein TetQ	A	718	Bacteroides thetaiotaomicron VPI-5482	Mutation(s): 0  Gene Names: BT_2167
UniProt
Find proteins for Q8A5S1 (Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / JCM 5827 / CCUG 10774 / NCTC 10582 / VPI-5482 / E50)) Explore Q8A5S1  Go to UniProtKB:  Q8A5S1

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
GTP (Subject of Investigation/LOI)	B [auth A]	GUANOSINE-5'-TRIPHOSPHATE C10 H16 N5 O14 P3 XKMLYUALXHKNFT-UUOKFMHZSA-N
MG (Subject of Investigation/LOI)	C [auth A]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 3.70 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2023-05-10 
Deposition Author(s): Wang, C., Han, W., Groisman, E.A., Liu, J.

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Funding Organization	Location	Grant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)	United States	--

Revision History  

• Version 1.0: 2023-05-10
  Type: Initial release
  
• Version 1.1: 2024-06-12
  Changes: Data collection