7ULH | pdb_00007ulh

Crystal Structure of a Short chain dehydrogenase from Mycobacterium avium 104

PDB DOI: https://doi.org/10.2210/pdb7ULH/pdb

Classification: OXIDOREDUCTASE
Organism(s): Mycobacterium avium 104
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2022-04-04 Released: 2022-04-13
Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Funding Organization(s): National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.60 Å
R-Value Free:
0.193 (Depositor), 0.190 (DCC)
R-Value Work:
0.158 (Depositor), 0.160 (DCC)
R-Value Observed:
0.159 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Crystal Structure of Crystal Structure of a Short chain dehydrogenase from Mycobacterium avium 104

Abendroth, J., Sankaran, B., Lorimer, D.D., Horanyi, P.S., Edwards, T.E.

To be published.

Macromolecule Content

Total Structure Weight: 240.92 kDa
Atom Count: 15,788
Modeled Residue Count: 1,984
Deposited Residue Count: 2,296
Unique protein chains: 1

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Short chain dehydrogenase	A, B, C, D, E A, B, C, D, E, F, G	328	Mycobacterium avium 104	Mutation(s): 0 Gene Names: MAV_1937
UniProt
Find proteins for A0A0H2ZRP4 (Mycobacterium avium (strain 104)) Explore A0A0H2ZRP4 Go to UniProtKB: A0A0H2ZRP4
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A0H2ZRP4
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.60 Å
R-Value Free: 0.193 (Depositor), 0.190 (DCC)
R-Value Work: 0.158 (Depositor), 0.160 (DCC)
R-Value Observed: 0.159 (Depositor)

Diffraction Data: https://doi.org/10.18430/M37ULH

Space Group: H 3 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 241.81	α = 90
b = 241.81	β = 90
c = 241.96	γ = 120

Software Package:

Software Name	Purpose
XDS	data reduction
XSCALE	data scaling
PHENIX	refinement
PDB_EXTRACT	data extraction
MoRDa	phasing
Coot	model building

Structure Validation

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Entry History & Funding Information

Deposition Data

Released Date: 2022-04-13

Deposition Author(s):

Seattle Structural Genomics Center for Infectious Disease

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

Funding Organization	Location	Grant Number
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)	United States	HHSN272201700059C

Revision History (Full details and data files)

Version 1.0: 2022-04-13
Type: Initial release
Version 1.1: 2023-10-18
Changes: Data collection, Refinement description

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.