7UI8 | pdb_00007ui8

Intramolecular ester bond-containing repeat domain from E. columbae adhesin (split and religated)

PDB DOI: https://doi.org/10.2210/pdb7UI8/pdb

Classification: CELL ADHESION
Organism(s): Enterococcus columbae
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2022-03-28 Released: 2023-04-05
Deposition Author(s): Wardega, J.K., Squire, C.J., Young, P.G.
Funding Organization(s): Not funded

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.37 Å
R-Value Free:
0.261 (Depositor), 0.274 (DCC)
R-Value Work:
0.226 (Depositor), 0.231 (DCC)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

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This is version 1.2 of the entry. See complete history.

Literature

Intramolecular ester bond-containing repeat domain from E. columbae adhesin (split and religated)

Wardega, J.K., Squire, C.J., Young, P.G.

To be published.

Macromolecule Content

Total Structure Weight: 16.33 kDa
Atom Count: 1,026
Modeled Residue Count: 136
Deposited Residue Count: 151
Unique protein chains: 2

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Split ester bond-containing adhesin repeat domain	A	128	Enterococcus columbae	Mutation(s): 0 Gene Names: I568_02374
UniProt
Find proteins for S1N325 (Enterococcus columbae DSM 7374 = ATCC 51263) Explore S1N325 Go to UniProtKB: S1N325
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	S1N325
Sequence Annotations Expand
Reference Sequence

Find similar proteins by: Sequence | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
GLY-ASP-THR-LYS-HIS-GLU-VAL-ARG-HIS-GLU-ASN-PRO-GLN-ASP-GLU-ALA-GLN-THR-ILE-VAL-VAL-ASN-LYS	B	23	Enterococcus columbae	Mutation(s): 0
UniProt
Find proteins for S1N325 (Enterococcus columbae DSM 7374 = ATCC 51263) Explore S1N325 Go to UniProtKB: S1N325
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	S1N325
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.37 Å
R-Value Free: 0.261 (Depositor), 0.274 (DCC)
R-Value Work: 0.226 (Depositor), 0.231 (DCC)

Space Group: P 6 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 120.775	α = 90
b = 120.775	β = 90
c = 45.444	γ = 120

Software Package:

Software Name	Purpose
REFMAC	refinement
XDS	data reduction
Aimless	data scaling
PHASER	phasing

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2023-04-05

Deposition Author(s):

Funding Organization	Location	Grant Number
Not funded		--

Revision History (Full details and data files)

Version 1.0: 2023-04-05
Type: Initial release
Version 1.1: 2023-10-25
Changes: Data collection, Refinement description
Version 1.2: 2024-11-06
Changes: Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.