7UEC

Horse liver alcohol dehydrogenase with NAD and pentafluorobenzyl alcohol at 50 K

  • Classification: OXIDOREDUCTASE
  • Organism(s): Equus caballus
  • Mutation(s): No 

  • Deposited: 2022-03-21 Released: 2022-03-30 
  • Deposition Author(s): Plapp, B.V., Gakhar, L.
  • Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.20 Å
  • R-Value Free: 0.161 
  • R-Value Work: 0.124 
  • R-Value Observed: 0.125 

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Ligand Structure Quality Assessment 


This is version 1.1 of the entry. See complete history. 


Literature

Dependence of crystallographic atomic displacement factors on temperature (25-150 K) for complexes of horse liver alcohol dehydrogenases

Plapp, B.V., Gakhar, L., Subramanian, R.

(2022) Acta Crystallogr D Biol Crystallogr D78: 1221-1234


Macromolecules
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(by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Alcohol dehydrogenase E chainA, B374Equus caballusMutation(s): 0 
EC: 1.1.1.1
UniProt
Find proteins for P00327 (Equus caballus)
Explore P00327 
Go to UniProtKB:  P00327
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP00327
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
NAJ (Subject of Investigation/LOI)
Query on NAJ
Download Ideal Coordinates CCD File 
E [auth A],
L [auth B]		NICOTINAMIDE-ADENINE-DINUCLEOTIDE (ACIDIC FORM)
C21 H27 N7 O14 P2
BAWFJGJZGIEFAR-NNYOXOHSSA-N		 Ligand Interaction
PFB (Subject of Investigation/LOI)
Query on PFB
Download Ideal Coordinates CCD File 
F [auth A],
M [auth B]		2,3,4,5,6-PENTAFLUOROBENZYL ALCOHOL
C7 H3 F5 O
PGJYYCIOYBZTPU-UHFFFAOYSA-N		 Ligand Interaction
MRD
Query on MRD
Download Ideal Coordinates CCD File 
G [auth A],
H [auth A],
I [auth A],
N [auth B]		(4R)-2-METHYLPENTANE-2,4-DIOL
C6 H14 O2
SVTBMSDMJJWYQN-RXMQYKEDSA-N		 Ligand Interaction
ZN
Query on ZN
Download Ideal Coordinates CCD File 
C [auth A],
D [auth A],
J [auth B],
K [auth B]		ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N		 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.20 Å
  • R-Value Free: 0.161 
  • R-Value Work: 0.124 
  • R-Value Observed: 0.125 
  • Space Group: P 1
  • Diffraction Data DOI: 10.15785/SBGRID/894
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 44.41α = 91.72
b = 51.22β = 103.11
c = 92.42γ = 110.22
Software Package:
Software NamePurpose
d*TREKdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
d*TREKdata reduction
Omodel building
REFMACphasing

Structure Validation

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Ligand Structure Quality Assessment 


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Entry History & Funding Information

Deposition Data

Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesAA00279
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesGM078446

Revision History  (Full details and data files)

  • Version 1.0: 2022-03-30
    Type: Initial release
  • Version 1.1: 2022-10-12
    Changes: Database references