7U13
TMEM106B(120-254) singlet amyloid fibril from frontotemporal lobar degeneration with TDP-43 pathology (FTLD-TDP) type A (case 4)
- PDB DOI: https://doi.org/10.2210/pdb7U13/pdb
- EM Map EMD-26276: EMDB EMDataResource
- Classification: PROTEIN FIBRIL
- Organism(s): Homo sapiens
- Expression System: Homo sapiens
- Mutation(s): No 
- Deposited: 2022-02-19 Released: 2022-03-23 
- Funding Organization(s): National Institutes of Health/National Institute of Neurological Disorders and Stroke (NIH/NINDS)
Experimental Data Snapshot
- Method: ELECTRON MICROSCOPY
- Resolution: 2.90 Å
- Aggregation State: FILAMENT 
- Reconstruction Method: HELICAL 
wwPDB Validation   3D Report Full Report
This is version 1.1 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Transmembrane protein 106B | 135 | Homo sapiens | Mutation(s): 0  Gene Names: TMEM106B | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q9NUM4 (Homo sapiens) Explore Q9NUM4  Go to UniProtKB:  Q9NUM4 | |||||
PHAROS:  Q9NUM4 GTEx:  ENSG00000106460  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q9NUM4 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
Ligands 1 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
NAG (Subject of Investigation/LOI) Query on NAG | D [auth A] E [auth A] F [auth A] G [auth A] H [auth B] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N |
Experimental Data & Validation
Experimental Data
- Method: ELECTRON MICROSCOPY
- Resolution: 2.90 Å
- Aggregation State: FILAMENT 
- Reconstruction Method: HELICAL 
Entry History & Funding Information
Deposition Data
- Released Date: 2022-03-23  Deposition Author(s): Fitzpatrick, A.W.P., Stowell, M.H.B., Chang, A., Xiang, X., Wang, J., Lee, C., Arakhamia, T., Simjanoska, M., Wang, C., Carlomagno, Y., Zhang, G., Dhingra, S., Thierry, M., Perneel, J., Heeman, B., Forgrave, L.M., DeTure, M., DeMarco, M.L., Cook, C.N., Rademakers, R., Dickson, D., Petrucelli, L., Mackenzie, I.R.A.
Funding Organization | Location | Grant Number |
---|---|---|
National Institutes of Health/National Institute of Neurological Disorders and Stroke (NIH/NINDS) | United States | UO1NS110438 |
Revision History (Full details and data files)
- Version 1.0: 2022-03-23
Type: Initial release - Version 1.1: 2022-04-27
Changes: Database references