7U0W | pdb_00007u0w

Structure of myxoma virus M062 protein variant MAV

• PDB DOI: https://doi.org/10.2210/pdb7U0W/pdb

• Classification: VIRAL PROTEIN
• Organism(s): Myxoma virus (strain Lausanne)
• Expression System: Escherichia coli #1/H766
• Mutation(s): Yes 


• Deposited: 2022-02-19 Released: 2023-02-22 
• Deposition Author(s): O'Byrne, P., Khan, A.R.
• Funding Organization(s): Science Foundation Ireland

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 3.21 Å
• R-Value Free: 
  0.307 (Depositor), 0.310 (DCC) 
• R-Value Work: 
  0.289 (Depositor), 0.290 (DCC) 
• R-Value Observed: 
  0.290 (Depositor) 

Starting Model: experimental

Literature

Structure of myxoma virus M062 protein variant MAV

O'Byrne, P., Khan, A.R.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: light scattering

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 37.28 kDa 
• Atom Count: 2,313 
• Modeled Residue Count: 287 
• Deposited Residue Count: 322 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Probable host range protein 2-1	A, B	161	Myxoma virus (strain Lausanne)	Mutation(s): 4  Gene Names: m062R
UniProt
Find proteins for P68550 (Myxoma virus (strain Lausanne)) Explore P68550  Go to UniProtKB:  P68550

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 3.21 Å
• R-Value Free:  0.307 (Depositor), 0.310 (DCC) 
• R-Value Work:  0.289 (Depositor), 0.290 (DCC) 
• R-Value Observed: 0.290 (Depositor) 

Space Group: P 6

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 148.844	α = 90
b = 148.844	β = 90
c = 38.596	γ = 120

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
Aimless	data scaling
PHASER	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2023-02-22 
Deposition Author(s): O'Byrne, P., Khan, A.R.

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Funding Organization	Location	Grant Number
Science Foundation Ireland	Ireland	SFI 12/1A/1239

Revision History  

• Version 1.0: 2023-02-22
  Type: Initial release
  
• Version 1.1: 2023-08-30
  Changes: Data collection, Database references, Refinement description, Source and taxonomy, Structure summary
• Version 1.2: 2023-10-25
  Changes: Refinement description