7U08

Structure of CD148 fibronectin type III domain 1 and 2

  • Classification: SIGNALING PROTEIN
  • Organism(s): Homo sapiens
  • Expression System: Escherichia coli
  • Mutation(s): No 

  • Deposited: 2022-02-17 Released: 2023-02-22 
  • Deposition Author(s): Zhou, D., Zhu, J.
  • Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS), National Institutes of Health/National Heart, Lung, and Blood Institute (NIH/NHLBI)

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.31 Å
  • R-Value Free: 0.300 
  • R-Value Work: 0.268 
  • R-Value Observed: 0.271 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history. 


Literature

Structure of CD148 fibronectin type III domain 1 and 2

Zhou, D., Zhu, J.

To be published.

Macromolecules
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Receptor-type tyrosine-protein phosphatase eta338Homo sapiensMutation(s): 0 
Gene Names: PTPRJ, DEP1
EC: 3.1.3.48
UniProt & NIH Common Fund Data Resources
Find proteins for Q12913 (Homo sapiens)
Explore Q12913 
Go to UniProtKB:  Q12913
PHAROS:  Q12913
GTEx:  ENSG00000149177 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ12913
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
PT
Query on PT
Download Ideal Coordinates CCD File 
B [auth A]PLATINUM (II) ION
Pt
HRGDZIGMBDGFTC-UHFFFAOYSA-N
Modified Residues  1 Unique
IDChains TypeFormula2D DiagramParent
MSE
Query on MSE
A
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.31 Å
  • R-Value Free: 0.300 
  • R-Value Work: 0.268 
  • R-Value Observed: 0.271 
  • Space Group: P 65 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 142.325α = 90
b = 142.325β = 90
c = 57.722γ = 120
Software Package:
Software NamePurpose
PHENIXrefinement
PHENIXrefinement
HKL-3000data reduction
Aimlessdata scaling
AutoSolphasing

Structure Validation

View Full Validation Report



View more in-depth experimental data
Entry History & Funding Information

Deposition Data

Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesGM137143
National Institutes of Health/National Heart, Lung, and Blood Institute (NIH/NHLBI)United StatesHL131836

Revision History  (Full details and data files)

  • Version 1.0: 2023-02-22
    Type: Initial release