7TZO

The apo structure of human mTORC2 complex


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.28 Å
  • Aggregation State: 3D ARRAY 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


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Literature

Interactions between mTORC2 core subunits Rictor and mSin1 dictate selective and context-dependent phosphorylation of substrate kinases SGK1 and Akt.

Yu, Z.Chen, J.Takagi, E.Wang, F.Saha, B.Liu, X.Joubert, L.M.Gleason, C.E.Jin, M.Li, C.Nowotny, C.Agard, D.Cheng, Y.Pearce, D.

(2022) J Biol Chem 298: 102288-102288

  • DOI: https://doi.org/10.1016/j.jbc.2022.102288
  • Primary Citation of Related Structures:  
    7TZO

  • PubMed Abstract: 

    Mechanistic target of rapamycin complex 2 (mTORC2) is a multi-subunit kinase complex, central to multiple essential signaling pathways. Two core subunits, Rictor and mSin1, distinguish it from the related mTORC1 and support context-dependent phosphorylation of its substrates. mTORC2 structures have been determined previously; however, important questions remain, particularly regarding the structural determinants mediating substrate specificity and context-dependent activity. Here, we used cryo-EM to obtain high-resolution structures of the human mTORC2 apo-complex in the presence of substrates Akt and SGK1. Using functional assays, we then tested predictions suggested by substrate-induced structural changes in mTORC2. For the first time, we visualized in the apo-state the side chain interactions between Rictor and mTOR that sterically occlude recruitment of mTORC1 substrates and confer resistance to the mTORC1 inhibitor rapamycin. Also in the apo-state, we observed that mSin1 formed extensive contacts with Rictor via a pair of short α-helices nestled between two Rictor helical repeat clusters, as well as by an extended strand that makes multiple weak contacts with Rictor helical cluster 1. In co-complex structures, we found that SGK1, but not Akt, markedly altered the conformation of the mSin1 N-terminal extended strand, disrupting multiple weak interactions while inducing a large rotation of mSin1 residue Arg-83, which then interacts with a patch of negatively charged residues within Rictor. Finally, we demonstrate mutation of Arg-83 to Ala selectively disrupts mTORC2-dependent phosphorylation of SGK1, but not of Akt, supporting context-dependent substrate selection. These findings provide new structural and functional insights into mTORC2 specificity and context-dependent activity.


  • Organizational Affiliation

    Department of Biochemistry and Biophysics, University of California, San Francisco, California, USA.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Serine/threonine-protein kinase mTOR
A, B
2,674Homo sapiensMutation(s): 0 
Gene Names: MTORFRAPFRAP1FRAP2RAFT1RAPT1
EC: 2.7.11.1
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Find proteins for P42345 (Homo sapiens)
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PHAROS:  P42345
GTEx:  ENSG00000198793 
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UniProt GroupP42345
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Target of rapamycin complex subunit LST8
C, D
347Homo sapiensMutation(s): 0 
Gene Names: MLST8GBLLST8
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PHAROS:  Q9BVC4
GTEx:  ENSG00000167965 
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UniProt GroupQ9BVC4
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Rapamycin-insensitive companion of mTOR
E, F
1,720Homo sapiensMutation(s): 0 
Gene Names: RICTORKIAA1999
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Find proteins for Q6R327 (Homo sapiens)
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GTEx:  ENSG00000164327 
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Target of rapamycin complex 2 subunit MAPKAP1
G, H
538Homo sapiensMutation(s): 0 
Gene Names: MAPKAP1MIP1SIN1
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PHAROS:  Q9BPZ7
GTEx:  ENSG00000119487 
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UniProt GroupQ9BPZ7
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.28 Å
  • Aggregation State: 3D ARRAY 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Cancer Institute (NIH/NCI)United States--

Revision History  (Full details and data files)

  • Version 1.0: 2023-01-11
    Type: Initial release