7TZ2

Structure of the Fibrinogen C-terminal domain of FGL1

  • Classification: IMMUNOSUPPRESSANT
  • Organism(s): Homo sapiens
  • Expression System: Trichoplusia ni
  • Mutation(s): No 

  • Deposited: 2022-02-15 Released: 2022-05-11 
  • Deposition Author(s): Ming, Q., Tran, T.H., Luca, V.C.
  • Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS), V Foundation for Cancer Research, Rita Allen Foundation

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.55 Å
  • R-Value Free: 0.234 
  • R-Value Work: 0.185 
  • R-Value Observed: 0.187 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

LAG3 ectodomain structure reveals functional interfaces for ligand and antibody recognition

Ming, Q.Tran, T.H.Luca, V.C.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Fibrinogen-like protein 1A, B, C233Homo sapiensMutation(s): 0 
Gene Names: FGL1HFREP1
UniProt & NIH Common Fund Data Resources
Find proteins for Q08830 (Homo sapiens)
Explore Q08830 
Go to UniProtKB:  Q08830
PHAROS:  Q08830
GTEx:  ENSG00000104760 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ08830
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CA (Subject of Investigation/LOI)
Query on CA

Download Ideal Coordinates CCD File 
D [auth A]CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.55 Å
  • R-Value Free: 0.234 
  • R-Value Work: 0.185 
  • R-Value Observed: 0.187 
  • Space Group: P 2 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 45.277α = 90
b = 110.893β = 90
c = 148.888γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
PDB_EXTRACTdata extraction
HKL-3000data reduction
HKL-3000data scaling
PHASERphasing

Structure Validation

View Full Validation Report




Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesR35GM133482
V Foundation for Cancer ResearchUnited States--
Rita Allen FoundationUnited States--

Revision History  (Full details and data files)

  • Version 1.0: 2022-05-11
    Type: Initial release