7TYQ

TEAD2 bound to Compound 1

PDB DOI: https://doi.org/10.2210/pdb7TYQ/pdb

Classification: TRANSCRIPTION
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2022-02-14 Released: 2023-05-03
Deposition Author(s): Noland, C.L., Fong, R.
Funding Organization(s): Other private

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.88 Å
R-Value Free: 0.247
R-Value Work: 0.206
R-Value Observed: 0.208

wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.1 of the entry. See complete history.

Literature

Novel mechanism of YAP-TEAD inhibition results in targeted chromatin remodeling and reveals an expanded Hippo dependent landscape in cancers

Hagenbeek, T.J., Zbieg, J.R., Noland, C.L., Yao, X., Schmidt, S., Clausen, S., Steffek, M., Lee, W., Beroza, P., Martin, S., Lin, E., Fong, R., Di Lello, P., Kubala, M.H., Lacap, J.A., Yang, M.N.Y., Maddalo, D., Lau, J.T., An, L., Levy, E., Lorenzo, M.N., Lee, H.J., Pham, T.H., Modrusan, Z., Zang, R., Chen, Y.C., Li, J., Hafner, M., Chang, M.T., Crawford, J.J., Dey, A.

To be published.

Macromolecule Content

Total Structure Weight: 53.3 kDa
Atom Count: 3,369
Modelled Residue Count: 398
Deposited Residue Count: 462
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Transcriptional enhancer factor TEF-4	A, B	231	Homo sapiens	Mutation(s): 0 Gene Names: TEAD2, TEF4
UniProt & NIH Common Fund Data Resources
Find proteins for Q15562 (Homo sapiens) Explore Q15562 Go to UniProtKB: Q15562
PHAROS: Q15562 GTEx: ENSG00000074219
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q15562
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
KUI (Subject of Investigation/LOI) Query on KUI Download Ideal Coordinates CCD File SDF format, chain C [auth A] SDF format, chain D [auth B] MOL2 format, chain C [auth A] MOL2 format, chain D [auth B]	C [auth A], D [auth B]	ethyl (8S)-7-oxo-5-[4-(trifluoromethyl)phenyl]-4,7-dihydropyrazolo[1,5-a]pyrimidine-3-carboxylate C₁₆ H₁₂ F₃ N₃ O₃ TWBQZWQWRZJYPA-UHFFFAOYSA-N		Interactions Focus chain C [auth A] Focus chain D [auth B] Interactions & Density Focus chain C [auth A] Focus chain D [auth B]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.88 Å
R-Value Free: 0.247
R-Value Work: 0.206
R-Value Observed: 0.208
Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 114.854	α = 90
b = 61.183	β = 111.608
c = 79.951	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
Aimless	data scaling
PHASER	phasing

Structure Validation

View Full Validation Report

Ligand Structure Quality Assessment

Entry History & Funding Information

Deposition Data

Released Date: 2023-05-03

Deposition Author(s):

Funding Organization	Location	Grant Number
Other private		--

Revision History (Full details and data files)

Version 1.0: 2023-05-03
Type: Initial release
Version 1.1: 2023-10-25
Changes: Data collection, Refinement description

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.