7TYE | pdb_00007tye

The crystal structure of 3,4-dihydroxy-2-butanone 4-phosphate synthase mutant (G108S) from E. Coli


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.94 Å
  • R-Value Free: 
    0.224 (Depositor), 0.228 (DCC) 
  • R-Value Work: 
    0.196 (Depositor), 0.199 (DCC) 
  • R-Value Observed: 
    0.197 (Depositor) 

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Validation slider image for 7TYE

This is version 1.1 of the entry. See complete history

Literature

The crystal structure of 3,4-dihydroxy-2-butanone 4-phosphate synthase mutant (G108S) from E. Coli

Tan, K.Perkovich, P.Joachimiak, A.

To be published.

Macromolecule Content 

  • Total Structure Weight: 73.41 kDa 
  • Atom Count: 4,870 
  • Modeled Residue Count: 640 
  • Deposited Residue Count: 678 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
3,4-dihydroxy-2-butanone 4-phosphate synthase
A, B, C
226Escherichia coliMutation(s): 1 
Gene Names: 
ribBribB_1A6519_001821A6583_08195A6592_00475A8C65_08565A8W81_002595A8X68_002370A9819_17530A9X72_03655AAG43_000631ABE90_004345ABT96_003312ACN68_04420ACN81_21330ACU57_05050ACW72_002758AM270_10855AM340_10760AM464_07470AMK64_001824AML23_19935AO169_002970APX88_18905AT335_000760AT845_001998AUQ29_13020AW059_22975AW086_02310B2D52_003328B5N24_000792B6L15_003047B6R17_003588B6R27_003447B6R48_003723B6R87_003495B7C15_004686BANRA_01658BANRA_03956BANRA_04051BANRA_04205BB545_10585BE963_06040BF271_001130BF481_002801BFL24_21180BG821_002706BG944_003509BHF52_06970BHS87_17190BIQ87_17290BJI68_02815BJJ90_03530BK292_10995BK373_10875BKD45_000386BMC34_000332BMC79_003295BMT50_13620BMT91_14570BO068_000248BOH76_02050BON63_15045BON65_07145BON66_17455BON70_12255BON73_21300BON76_06350BON87_14390BON93_10355BON95_22875BON96_07125BTQ06_21170BUE81_02910BUE82_02710BvCms2454_02340BvCmsC61A_01364BvCmsHHP019_01702BvCmsHHP056_00960BvCmsKKP005_04015BvCmsKKP036_00383BvCmsKKP057_00168BvCmsKKP061_00971BvCmsKSNP073_00205BvCmsKSP011_03967BvCmsKSP067_02749BvCmsKSP076_01490BvCmsNSNP036_02002BvCmsSIP082_03546BVL39_10960BWI89_23105BXT93_07215C2M16_05000C2U48_18630C3F40_21225C4952_000559C5542_001780C5715_01815C5F72_04105C5N07_16955C5Y87_01265C6B22_14795C6N50_000045C7B02_08385C9114_14245C9160_03115C9E67_04240C9Z62_01135CA593_11110CBT22_003186CCS08_11265CCZ91_002952CDC27_16310CDL36_05385CF32_002004CG692_20525CG831_002556CIG67_19720CLG78_000376CN875_002206CO706_13820COD50_12885CR539_20275CS116_002503CV83915_03117CWS33_20165D0X26_08300D3822_05205D3O91_09960D3Y67_11660D5H22_00455D6T60_20310D9D77_02545D9H13_08950D9H94_02245D9J03_01850D9J11_00360D9K17_10555DAH18_13120DAH23_16900DAH34_16955DAH37_03360DAH50_01510DB282_13640DEN89_08565DEN95_07415DEO15_04205DIV22_09975DL654_14560DLX40_00490DM968_00310DN627_00555DNQ45_12580DP258_07180DRW19_00455DS732_22790DTL43_13415DTL90_11885DTM10_13585DTM45_04080DXT69_09580DXT71_18690DXT73_08665E0I42_16405E0N24_22480E2112_15800E2119_17625E2127_16100E2128_12480E2129_12985E2135_14860E4K51_04755E5P52_08445E5S34_14980E5S35_12445E5S38_15370E5S43_12575E5S47_03535E5S52_13245E5S61_06420E5S62_00060EAX79_10065EBP16_04025EC1094V2_611EC3234A_51c00960EC95NR1_02415ECs3929ED648_05030EGC08_05095EH88_002433EHD79_08380EHH55_23580EI021_05490EI041_02750EIA13_22925EIZ93_03390EKI52_19020EL79_0666EL80_0658ELT21_11830ELT31_13650ELT49_09345ELT58_01170ELU85_07655ELU95_11650ELX69_05795ELX76_20110ELY05_21255ELY48_00450ERS085386_00632ERS139208_02078Esc0902E_33090ETECE1373_00716ETECE36_01331ETECE925_00748EVY14_08055EXX13_07835EXX79_06390EYX47_17790EYX55_17095F2N27_05570F2N28_04215F2N31_03945F3N40_23595F9386_06745F9400_13400F9407_22160F9S76_02440F9S83_18085F9V07_08290F9V24_10835F9X20_000585F9X20_00575FC554_17755FDM60_11510FFF58_12715FHD44_03935FHR00_18345FJQ51_18915FKO60_05520FMP09_03755FOI11_020545FOI11_02635FPS82_08210FQ021_06460FQE77_22590FQF29_00510FTV92_21975FTV93_22170FV293_12435FY127_02275FZC17_07490FZN30_14545G3813_002580G4A38_09020G5632_06905G5696_02570G6Z99_03325G7635_002587G9448_18360GAJ26_00670GBE29_13025GF646_07945GF699_06275GFY34_05550GFY48_06130GFZ60_16630GIB53_12220GJ11_19995GKF52_13910GKF86_21645GKF89_10300GKG12_09310GKZ24_21025GNO40_18200GNZ05_17920GP650_03440GP662_09035GP946_07895GP979_27370GQE42_15525GQE64_17785GQE87_22865GQF58_09845GQF59_09985GQM04_04665GQM09_03395GQM10_12705GQM13_08705GQR15_09500GQW68_18060GQW76_25445GRQ19_14810GRW05_30915GRW05_30920GRW57_06805GRW57_20735GRW80_00345GRW81_06065GSY44_06755GUC01_10835GXV26_002895H0O72_14225H4P47_03685H4P50_03320H4P51_03310H5C78_19765HCF72_000893HHG09_005053HHH44_002419HIF90_001504HIR12_002153HIT56_000571HJN04_002298HJO75_003998HJQ60_001955HJS37_001886HJS41_003640HKA49_001389HLU56_15610HmCms184_01000HMS79_13625HMT08_03515HMU48_02410HMV95_05820HNC30_10760HNC36_03575HNC52_11125HNC59_18460HNC75_05155HNC99_14475HNO08_12950HNV65_01725HNY50_02350HPE39_22060HV109_03480HVV53_12470HVW11_14015HVX16_03705HVX31_03065HVY77_04050HVZ29_17835HVZ30_03155HVZ33_03370HX136_02895HZ71_002968I6H00_22190I6H01_09465I6H02_10780IA00_001075JE86ST02C_35250JE86ST05C_35290MJ49_15040NCTC10082_03108NCTC10090_03789NCTC10429_01440NCTC10764_04142NCTC11022_03193NCTC11181_02993NCTC11341_01560NCTC12950_00747NCTC13148_03062NCTC13216_01084NCTC4450_02735NCTC7922_03708NCTC7927_00827NCTC8008_05080NCTC8179_06257NCTC8500_00687NCTC8622_07726NCTC8960_03400NCTC8985_05353NCTC9036_00817NCTC9045_00870NCTC9048_00791NCTC9050_03866NCTC9073_05354NCTC9077_00936NCTC9111_01158NCTC9117_01087NCTC9702_00815NCTC9703_05266NCTC9706_03012NCTC9777_02170NCTC9962_00029ND22_002317PGD_04075PU06_26310RG28_20050SAMEA3472043_01633SAMEA3472044_01806SAMEA3472056_04205SAMEA3472064_00537SAMEA3472080_00817SAMEA3472112_02808SAMEA3472117_03211SAMEA3472147_02556SAMEA3484427_04331SAMEA3484429_04653SAMEA3485101_01583SAMEA3485110_00479SAMEA3751407_00676SAMEA3752312_02334SAMEA3752386_00591SAMEA3752557_02687SAMEA3753064_03850SAMEA3753290_04089SAMEA3753300_03351SM09_03329THOESC010_07130TUM18780_06690UN91_14890WP2S18E08_07400WP4S18E07_06760WP4S18E08_06750WR15_10385

EC: 4.1.99.12
UniProt
Find proteins for P0A7J0 (Escherichia coli (strain K12))
Explore P0A7J0 
Go to UniProtKB:  P0A7J0
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP0A7J0
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.94 Å
  • R-Value Free:  0.224 (Depositor), 0.228 (DCC) 
  • R-Value Work:  0.196 (Depositor), 0.199 (DCC) 
  • R-Value Observed: 0.197 (Depositor) 
Space Group: C 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 164.99α = 90
b = 108.514β = 98.738
c = 47.438γ = 90
Software Package:
Software NamePurpose
SBC-Collectdata collection
PHENIXrefinement
HKL-3000data reduction
HKL-3000data scaling
HKL-3000phasing

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Department of Energy (DOE, United States)United StatesDE-AC02- 06CH11357

Revision History  (Full details and data files)

  • Version 1.0: 2022-02-23
    Type: Initial release
  • Version 1.1: 2023-10-18
    Changes: Data collection, Refinement description