7TXJ | pdb_00007txj

Cryo-EM of AFV6

• PDB DOI: https://doi.org/10.2210/pdb7TXJ/pdb
• NAKB: 7TXJ
• EM Map EMD-26159: EMDB EMDataResource

• Classification: VIRUS
• Organism(s): Betalipothrixvirus pozzuoliense
• Mutation(s): No 


• Deposited: 2022-02-09 Released: 2022-06-01 
• Deposition Author(s): Wang, F., Cvirkaite-Krupovic, V., Krupovic, M., Egelman, E.H.
• Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 3.90 Å
• Aggregation State: FILAMENT 
• Reconstruction Method: HELICAL 

Literature

Cryo-EM of AFV6

Wang, F., Cvirkaite-Krupovic, V., Krupovic, M., Egelman, E.H.

To be published.

Biological Assembly 1  

Global Symmetry: Helical - H  (Explore in 3D)
Global Stoichiometry: Hetero 60-mer - A30B30 Pseudo Symmetry: Helical - H  (Explore in 3D)
Pseudo Stoichiometry: Homo 60-mer - A60 

Biological assembly 1 assigned by authors and generated by (software)

Biological Assembly Evidence: microscopy

Macromolecule Content 

• Total Structure Weight: 48.66 kDa 
• Atom Count: 3,259 
• Modeled Residue Count: 376 
• Deposited Residue Count: 393 
• Unique protein chains: 2
• Unique nucleic acid chains: 1

Macromolecules

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
MCP1	C [auth A]	165	Betalipothrixvirus pozzuoliense	Mutation(s): 0
UniProt
Find proteins for A7WKI9 (Betalipothrixvirus pozzuoliense) Explore A7WKI9  Go to UniProtKB:  A7WKI9

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
MCP2	D [auth a]	204	Betalipothrixvirus pozzuoliense	Mutation(s): 0
UniProt
Find proteins for A7WKJ0 (Betalipothrixvirus pozzuoliense) Explore A7WKJ0  Go to UniProtKB:  A7WKJ0

Entity ID: 1
Molecule	Chains	Length	Organism	Image
DNA (5'-D(*TP*AP*TP*AP*TP*AP*TP*AP*TP*AP*TP*A)-3')	A [auth 1], B [auth 2]	12	Betalipothrixvirus pozzuoliense

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 3.90 Å
• Aggregation State: FILAMENT 
• Reconstruction Method: HELICAL 

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	PHENIX

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2022-06-01 
Deposition Author(s): Wang, F., Cvirkaite-Krupovic, V., Krupovic, M., Egelman, E.H.

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Funding Organization	Location	Grant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)	United States	R35GM122510
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)	United States	K99GM138756

Revision History  

• Version 1.0: 2022-06-01
  Type: Initial release
  
• Version 1.1: 2024-02-21
  Changes: Data collection
• Version 1.2: 2025-06-04
  Changes: Data collection, Structure summary