7TRR

Structure of Neisseria gonorrhoeae peptidoglycan O-acetyltransferase B (PatB) with methylsulfonyl adduct

• PDB DOI: https://doi.org/10.2210/pdb7TRR/pdb

• Classification: TRANSFERASE
• Organism(s): Neisseria gonorrhoeae FA 1090
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2022-01-30 Released: 2023-02-01 
• Deposition Author(s): Brott, A.S., Stangherlin, S., Clarke, A.J.
• Funding Organization(s): Canadian Institutes of Health Research (CIHR), Canadian Glycomics Network (GLYCONET)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.80 Å
• R-Value Free: 0.229 
• R-Value Work: 0.196 
• R-Value Observed: 0.197 

Literature

Structure of Neisseria gonorrhoeae peptidoglycan O-acetyltransferase B (PatB)

Brott, A.S., Stangherlin, S., Clarke, A.J.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: gel filtration

Macromolecule Content

• Total Structure Weight: 25.53 kDa 
• Atom Count: 1,890 
• Modelled Residue Count: 219 
• Deposited Residue Count: 225 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Peptidoglycan O-acetyltransferase B	A	225	Neisseria gonorrhoeae FA 1090	Mutation(s): 0  Gene Names: NGO_0533
UniProt
Find proteins for Q5F966 (Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090)) Explore Q5F966  Go to UniProtKB:  Q5F966

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
03S (Subject of Investigation/LOI)	B [auth A]	methanesulfonic acid C H4 O3 S AFVFQIVMOAPDHO-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.80 Å
• R-Value Free: 0.229 
• R-Value Work: 0.196 
• R-Value Observed: 0.197 
• Space Group: H 3 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 145.68	α = 90
b = 145.68	β = 90
c = 78.41	γ = 120

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-2000	data reduction
HKL-2000	data scaling
PHASER	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2023-02-01 
Deposition Author(s): Brott, A.S., Stangherlin, S., Clarke, A.J.

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Funding Organization	Location	Grant Number
Canadian Institutes of Health Research (CIHR)	Canada	PJT156353
Canadian Glycomics Network (GLYCONET)	Canada	--

Revision History  

• Version 1.0: 2023-02-01
  Type: Initial release
  
• Version 1.1: 2023-10-25
  Changes: Data collection, Refinement description