7TMB

Crystal Structure of N-ethylmaleimide reductase from Klebsiella pneumoniae


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.10 Å
  • R-Value Free: 0.231 
  • R-Value Work: 0.192 
  • R-Value Observed: 0.194 

wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 


This is version 1.0 of the entry. See complete history


Literature

Crystal Structure of N-ethylmaleimide reductase from Klebsiella pneumoniae

Lovell, S.Liu, L.Battaile, K.P.Tillery, L.Shek, R.Craig, J.K.Barrett, L.K.Van Voorhis, W.C.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
N-ethylmaleimide reductase
A, B, C, D, E, F
A, B, C, D, E, F
373Klebsiella pneumoniae subsp. pneumoniae HS11286Mutation(s): 0 
Gene Names: KPHS_29700
UniProt
Find proteins for A0A0H3GQS4 (Klebsiella pneumoniae subsp. pneumoniae (strain HS11286))
Explore A0A0H3GQS4 
Go to UniProtKB:  A0A0H3GQS4
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A0H3GQS4
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
FMN (Subject of Investigation/LOI)
Query on FMN

Download Ideal Coordinates CCD File 
BA [auth E],
GA [auth F],
H [auth A],
L [auth B],
Q [auth C],
BA [auth E],
GA [auth F],
H [auth A],
L [auth B],
Q [auth C],
W [auth D]
FLAVIN MONONUCLEOTIDE
C17 H21 N4 O9 P
FVTCRASFADXXNN-SCRDCRAPSA-N
 Ligand Interaction
PG4
Query on PG4

Download Ideal Coordinates CCD File 
DA [auth E],
EA [auth E],
I [auth A],
IA [auth F],
J [auth A],
DA [auth E],
EA [auth E],
I [auth A],
IA [auth F],
J [auth A],
JA [auth F],
N [auth B],
O [auth B],
T [auth C],
U [auth C],
Y [auth D],
Z [auth D]
TETRAETHYLENE GLYCOL
C8 H18 O5
UWHCKJMYHZGTIT-UHFFFAOYSA-N
 Ligand Interaction
FLC
Query on FLC

Download Ideal Coordinates CCD File 
CA [auth E],
HA [auth F],
M [auth B],
R [auth C],
S [auth C],
CA [auth E],
HA [auth F],
M [auth B],
R [auth C],
S [auth C],
X [auth D]
CITRATE ANION
C6 H5 O7
KRKNYBCHXYNGOX-UHFFFAOYSA-K
 Ligand Interaction
NA
Query on NA

Download Ideal Coordinates CCD File 
AA [auth E],
FA [auth F],
G [auth A],
K [auth B],
P [auth C],
AA [auth E],
FA [auth F],
G [auth A],
K [auth B],
P [auth C],
V [auth D]
SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.10 Å
  • R-Value Free: 0.231 
  • R-Value Work: 0.192 
  • R-Value Observed: 0.194 
  • Space Group: C 2 2 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 131.307α = 90
b = 223.87β = 90
c = 223.371γ = 90
Software Package:
Software NamePurpose
XDSdata reduction
Aimlessdata scaling
MOLREPphasing
PHENIXrefinement
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report



Ligand Structure Quality Assessment 



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)United StatesHHSN272201700059C

Revision History  (Full details and data files)

  • Version 1.0: 2022-02-02
    Type: Initial release