7TLV

Structure of Neisseria gonorrhoeae peptidoglycan O-acetyltransferase B (PatB) substituted with selenomethionine

PDB DOI: https://doi.org/10.2210/pdb7TLV/pdb

Classification: TRANSFERASE
Organism(s): Neisseria gonorrhoeae FA 1090
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2022-01-18 Released: 2023-01-25
Deposition Author(s): Brott, A.S., Stangherlin, S., Clarke, A.J.
Funding Organization(s): Canadian Institutes of Health Research (CIHR), Canadian Glycomics Network (GLYCONET)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.50 Å
R-Value Free: 0.222
R-Value Work: 0.204
R-Value Observed: 0.205

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Structure of Neisseria gonorrhoeae peptidoglycan O-acetyltransferase B (PatB)

Brott, A.S., Stangherlin, S., Clarke, A.J.

To be published.

Macromolecule Content

Total Structure Weight: 25.78 kDa
Atom Count: 1,909
Modelled Residue Count: 219
Deposited Residue Count: 227
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Periplasmic protein	A	227	Neisseria gonorrhoeae FA 1090	Mutation(s): 0 Gene Names: NGO_0533
UniProt
Find proteins for Q5F966 (Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090)) Explore Q5F966 Go to UniProtKB: Q5F966
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q5F966
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.50 Å
R-Value Free: 0.222
R-Value Work: 0.204
R-Value Observed: 0.205
Space Group: H 3 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 145.17	α = 90
b = 145.17	β = 90
c = 79.09	γ = 120

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-2000	data reduction
HKL-2000	data scaling
PHASER	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2023-01-25

Deposition Author(s):

Stangherlin, S.

Funding Organization	Location	Grant Number
Canadian Institutes of Health Research (CIHR)	Canada	PJT156353
Canadian Glycomics Network (GLYCONET)	Canada	--

Revision History (Full details and data files)

Version 1.0: 2023-01-25
Type: Initial release

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.