7TKF

Yeast ATP synthase State 2binding(b) with 10 mM ATP backbone model

  • Classification: HYDROLASE
  • Organism(s): Saccharomyces cerevisiae
  • Mutation(s): No 

  • Deposited: 2022-01-17 Released: 2022-05-11 
  • Deposition Author(s): Guo, H., Rubinstein, J.L.
  • Funding Organization(s): Canada Research Chairs, Canadian Institutes of Health Research (CIHR), Canada Foundation for Innovation

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 7.10 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Structure of ATP synthase under strain during catalysis.

Guo, H.Rubinstein, J.L.

(2022) Nat Commun 13: 2232-2232

  • DOI: 10.1038/s41467-022-29893-2
  • Primary Citation of Related Structures:  
    7TJS, 7TJT, 7TJU, 7TJV, 7TJW, 7TJX, 7TJY, 7TJZ, 7TK0, 7TK1, 7TK2, 7TK3, 7TK4, 7TK5, 7TK6, 7TK7, 7TK8, 7TK9, 7TKA, 7TKB, 7TKC, 7TKD, 7TKE, 7TKF, 7TKG, 7TKH, 7TKI, 7TKJ, 7TKK, 7TKL, 7TKM, 7TKN, 7TKO, 7TKP, 7TKQ, 7TKR, 7TKS

  • PubMed Abstract: 
  • ATP synthases are macromolecular machines consisting of an ATP-hydrolysis-driven F 1 motor and a proton-translocation-driven F O motor. The F 1 and F O motors oppose each other's action on a shared rotor subcomplex and are held stationary relative to each other by a peripheral stalk ...

    ATP synthases are macromolecular machines consisting of an ATP-hydrolysis-driven F 1 motor and a proton-translocation-driven F O motor. The F 1 and F O motors oppose each other's action on a shared rotor subcomplex and are held stationary relative to each other by a peripheral stalk. Structures of resting mitochondrial ATP synthases revealed a left-handed curvature of the peripheral stalk even though rotation of the rotor, driven by either ATP hydrolysis in F 1 or proton translocation through F O , would apply a right-handed bending force to the stalk. We used cryoEM to image yeast mitochondrial ATP synthase under strain during ATP-hydrolysis-driven rotary catalysis, revealing a large deformation of the peripheral stalk. The structures show how the peripheral stalk opposes the bending force and suggests that during ATP synthesis proton translocation causes accumulation of strain in the stalk, which relaxes by driving the relative rotation of the rotor through six sub-steps within F 1 , leading to catalysis.


    Organizational Affiliation

    Department of Biochemistry, The University of Toronto, Toronto, Ontario, Canada. john.rubinstein@utoronto.ca.



Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
ATP synthase subunit 976Saccharomyces cerevisiaeMutation(s): 0 
UniProt
Find proteins for P61829 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P61829 
Go to UniProtKB:  P61829
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP61829
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
ATP synthase subunit alphaK [auth A],
L [auth B],
M [auth C]
510Saccharomyces cerevisiaeMutation(s): 0 
UniProt
Find proteins for P07251 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P07251 
Go to UniProtKB:  P07251
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP07251
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetailsImage
ATP synthase subunit betaN [auth D],
O [auth E],
P [auth F]
478Saccharomyces cerevisiaeMutation(s): 0 
EC: 7.1.2.2
UniProt
Find proteins for P00830 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P00830 
Go to UniProtKB:  P00830
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP00830
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 4
MoleculeChainsSequence LengthOrganismDetailsImage
ATP synthase subunit gammaQ [auth G]278Saccharomyces cerevisiaeMutation(s): 0 
UniProt
Find proteins for P38077 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P38077 
Go to UniProtKB:  P38077
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP38077
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 5
MoleculeChainsSequence LengthOrganismDetailsImage
ATP synthase subunit deltaR [auth H]138Saccharomyces cerevisiaeMutation(s): 0 
UniProt
Find proteins for Q12165 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore Q12165 
Go to UniProtKB:  Q12165
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ12165
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 6
MoleculeChainsSequence LengthOrganismDetailsImage
ATP synthase subunit epsilonS [auth I]61Saccharomyces cerevisiaeMutation(s): 0 
UniProt
Find proteins for P21306 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P21306 
Go to UniProtKB:  P21306
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP21306
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 7
MoleculeChainsSequence LengthOrganismDetailsImage
ATP synthase subunit 5T [auth O]195Saccharomyces cerevisiaeMutation(s): 0 
UniProt
Find proteins for P09457 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P09457 
Go to UniProtKB:  P09457
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP09457
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 8
MoleculeChainsSequence LengthOrganismDetailsImage
ATP synthase subunit aU [auth T]249Saccharomyces cerevisiaeMutation(s): 0 
UniProt
Find proteins for P00854 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P00854 
Go to UniProtKB:  P00854
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP00854
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 9
MoleculeChainsSequence LengthOrganismDetailsImage
ATP synthase subunit 4V [auth U]209Saccharomyces cerevisiaeMutation(s): 0 
UniProt
Find proteins for P05626 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P05626 
Go to UniProtKB:  P05626
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP05626
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 10
MoleculeChainsSequence LengthOrganismDetailsImage
ATP synthase subunit dW [auth V]173Saccharomyces cerevisiaeMutation(s): 0 
UniProt
Find proteins for P30902 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P30902 
Go to UniProtKB:  P30902
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP30902
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 11
MoleculeChainsSequence LengthOrganismDetailsImage
ATP synthase subunit fX [auth W]95Saccharomyces cerevisiaeMutation(s): 0 
UniProt
Find proteins for Q06405 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore Q06405 
Go to UniProtKB:  Q06405
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ06405
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 12
MoleculeChainsSequence LengthOrganismDetailsImage
ATP synthase subunit HY [auth X]92Saccharomyces cerevisiaeMutation(s): 0 
UniProt
Find proteins for Q12349 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore Q12349 
Go to UniProtKB:  Q12349
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ12349
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 13
MoleculeChainsSequence LengthOrganismDetailsImage
ATP synthase subunit JZ [auth Y]59Saccharomyces cerevisiaeMutation(s): 0 
UniProt
Find proteins for P81450 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P81450 
Go to UniProtKB:  P81450
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP81450
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 14
MoleculeChainsSequence LengthOrganismDetailsImage
ATP synthase protein 8AA [auth Z]48Saccharomyces cerevisiaeMutation(s): 0 
UniProt
Find proteins for P00856 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P00856 
Go to UniProtKB:  P00856
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP00856
Protein Feature View
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 7.10 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report




Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Canada Research ChairsCanadaElectron Cryomicroscopy
Canadian Institutes of Health Research (CIHR)CanadaPJT162186
Canada Foundation for InnovationCanada--

Revision History  (Full details and data files)

  • Version 1.0: 2022-05-11
    Type: Initial release