7TJM | pdb_00007tjm

Bacteriophage Q beta capsid protein in T3 symmetry

PDB DOI: https://doi.org/10.2210/pdb7TJM/pdb

Classification: VIRUS LIKE PARTICLE
Organism(s): Bacteriophage sp.
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2022-01-16 Released: 2023-01-25
Deposition Author(s): Jin, X.
Funding Organization(s): Other private

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.54 Å
R-Value Free:
0.328 (Depositor), 0.307 (DCC)
R-Value Work:
0.278 (Depositor), 0.306 (DCC)
R-Value Observed:
0.281 (Depositor)

Starting Model: experimental
View more details

wwPDB Validation 3D Report Full Report

Validation slider image for 7TJM

This is version 1.2 of the entry. See complete history.

Literature

Alternative Assembly of Q beta Virus-like Particles

Shaw, V., Sungsuwan, S., McFall-Boegeman, H., Huang, X., Jin, X.

To be published.

Macromolecule Content

Total Structure Weight: 848.21 kDa
Atom Count: 59,580
Modeled Residue Count: 7,920
Deposited Residue Count: 7,920
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Minor capsid protein A1	A AA [auth L] AB [auth 4] B [auth a] BA [auth l] A, AA [auth L], AB [auth 4], B [auth a], BA [auth l], BB [auth X], C [auth B], CA [auth M], CB [auth 6], D [auth b], DA [auth m], DB [auth Z], E [auth C], EA [auth N], EB [auth 7], F [auth c], FA [auth n], FB [auth u], G [auth D], GA [auth O], GB [auth 8], H [auth d], HA [auth o], HB [auth 0], I [auth E], IA [auth 9], J [auth e], JA [auth v], K [auth 1], KA [auth P], L [auth U], LA [auth p], M [auth F], MA [auth Q], N [auth f], NA [auth q], O [auth G], OA [auth R], P [auth g], PA [auth r], Q [auth H], QA [auth S], R [auth h], RA [auth s], S [auth I], SA [auth T], T [auth i], TA [auth t], U [auth J], UA [auth w], V [auth j], VA [auth x], W [auth 5], WA [auth 2], X [auth Y], XA [auth V], Y [auth K], YA [auth 3], Z [auth k], ZA [auth W]	132	Bacteriophage sp.	Mutation(s): 0
UniProt
Find proteins for Q8LTE1 (Escherichia virus Qbeta) Explore Q8LTE1 Go to UniProtKB: Q8LTE1
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q8LTE1
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 3.54 Å
R-Value Free: 0.328 (Depositor), 0.307 (DCC)
R-Value Work: 0.278 (Depositor), 0.306 (DCC)
R-Value Observed: 0.281 (Depositor)

Space Group: H 3

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 286.627	α = 90
b = 286.627	β = 90
c = 662.678	γ = 120

Software Package:

Software Name	Purpose
REFMAC	refinement
PDB_EXTRACT	data extraction
XDS	data reduction
XDS	data scaling
PHASER	phasing

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2023-01-25

Deposition Author(s):

Funding Organization	Location	Grant Number
Other private	United States	--

Revision History (Full details and data files)

Version 1.0: 2023-01-25
Type: Initial release
Version 1.1: 2023-10-25
Changes: Data collection, Refinement description
Version 1.2: 2024-10-09
Changes: Structure summary

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

CoreTrustSeal

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.