Macromolecule Content

Total Structure Weight: 80.74 kDa
Atom Count: 4,333
Modelled Residue Count: 521
Deposited Residue Count: 734
Unique protein chains: 1

7THR

Cryo-electron microscopy of Adeno-associated virus serotype 4 at 2.2 A

PDB DOI: 10.2210/pdb7THR/pdb
EM Map EMD-25903: EMDB EMDataResource

Classification: VIRUS LIKE PARTICLE
Organism(s): Adeno-associated virus - 4
Expression System: Spodoptera frugiperda
Mutation(s): No

Deposited: 2022-01-11 Released: 2023-01-25
Deposition Author(s): Zane, G.M., Silveria, M.A., Meyer, N.L., White, T.A., Chapman, M.S.
Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.21 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Cryo-EM Structure of Adeno-associated virus-4 at 2.2 Angstroms resolution

Zane, G.M., Silveria, M.A., Meyer, N.L., White, T.A., Chapman, M.S.

To be published.

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Capsid	A	734	Adeno-associated virus - 4	Mutation(s): 0
UniProt
Find proteins for O41855 (Adeno-associated virus - 4) Explore O41855 Go to UniProtKB: O41855
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	O41855
Protein Feature View Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
MG Query on MG Download Ideal Coordinates CCD File SDF format, chain B [auth A] SDF format, chain C [auth A] MOL2 format, chain B [auth A] MOL2 format, chain C [auth A]	B [auth A], C [auth A]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N		Ligand Interaction

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 2.21 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2023-01-25

Deposition Author(s):

Funding Organization	Location	Grant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)	United States	R35GM122564

Revision History (Full details and data files)

Version 1.0: 2023-01-25
Type: Initial release

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.