7TCM | pdb_00007tcm

Crystal Structure of aspartate-semialdehyde dehydrogenase from Acinetobacter baumannii in complex with NADP

PDB DOI: https://doi.org/10.2210/pdb7TCM/pdb

Classification: OXIDOREDUCTASE
Organism(s): Acinetobacter baumannii
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2021-12-27 Released: 2022-01-12
Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Funding Organization(s): National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.95 Å
R-Value Free:
0.184 (Depositor), 0.185 (DCC)
R-Value Work:
0.152 (Depositor), 0.152 (DCC)
R-Value Observed:
0.153 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.1 of the entry. See complete history.

Literature

Crystal Structure of aspartate-semialdehyde dehydrogenase from Acinetobacter baumannii in complex with NADP

Abendroth, J., Fox III, D., Lorimer, D.D., Horanyi, P.S., Edwards, T.E.

To be published.

Macromolecule Content

Total Structure Weight: 84.76 kDa
Atom Count: 6,282
Modeled Residue Count: 745
Deposited Residue Count: 760
Unique protein chains: 1

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Aspartate-semialdehyde dehydrogenase	A, B	380	Acinetobacter baumannii	Mutation(s): 0 Gene Names: asd, A4U85_16455, A7M79_04310, A7M90_00850, AB945B12_01579, Aba10324_13155, ABA1_00505, Aba3207_13625, Aba9102_08520, ABCAM1_0431... asd, A4U85_16455, A7M79_04310, A7M90_00850, AB945B12_01579, Aba10324_13155, ABA1_00505, Aba3207_13625, Aba9102_08520, ABCAM1_0431, ABKPCSM17A_01579, ABR2090_3243, ABUW_3451, ACX61_16565, AM435_15890, AM457_06505, AN158_10835, AN415_03513, AT570_09565, AT571_09610, AUO97_09570, AWN74_02000, AXK18_06230, AYR68_01565, B4R90_00655, B7L35_10075, B7L43_09875, B7L45_17285, B9W69_01865, B9X95_14805, BAA1790NC_3240, BBX32_04865, BS065_16820, BS103_02010, C2U32_16770, C6N18_02990, CBL15_16380, CEJ64_04285, CHQ89_05190, CK824_16430, CPI82_07390, CSB70_0161, CTZ19_17155, D3X55_14075, D8O08_016425, DLI69_04520, DLI71_09400, DOL94_07895, DVA69_00765, E1A86_03360, E1A87_03810, E2538_04860, E2540_14275, EA667_016780, EA706_08250, EA720_008370, EA722_00480, EGX83_17575, EKS29_10330, EP550_16740, EP560_01405, EWO92_08255, EWO96_08505, EWP49_09585, F2P40_11035, F3P16_16550, F4T85_02365, F4T91_02330, F8B12_09455, F9K57_00965, FD887_00750, FD913_08045, FDF39_08485, FDN00_03760, FDO31_09120, FE003_17255, FGL68_13455, FJU36_06705, FJU76_11755, FJU87_00945, FQU82_00496, FR761_03465, G3N53_02155, GNY86_01050, GOD87_01905, H1058_02065, H1145_15800, H1159_02065, HLG75_16740, HLG77_15510, HWQ22_02430, HYI42_07470, IX88_04430, LV38_00123, LX00_02225, NCTC13305_01998, NCTC13421_03419, NCTC7364_00444, RU84_16220, SAMEA104305318_00176, SAMEA104305351_02004, SI89_03230, WP8W18E11_30280 EC: 1.2.1.11
UniProt
Find proteins for V5VGT0 (Acinetobacter baumannii) Explore V5VGT0 Go to UniProtKB: V5VGT0
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	V5VGT0
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
NAP (Subject of Investigation/LOI) Query on NAP Download:Ideal Coordinates CCD File SDF format, chain C [auth A] SDF format, chain D [auth B] MOL2 format, chain C [auth A] MOL2 format, chain D [auth B] mmCIF format, chain C [auth A] mmCIF format, chain D [auth B]	C [auth A], D [auth B]	NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE C₂₁ H₂₈ N₇ O₁₇ P₃ XJLXINKUBYWONI-NNYOXOHSSA-N		Interactions Focus chain C [auth A] Focus chain D [auth B] Interactions & Density Focus chain C [auth A] Focus chain D [auth B]