7TAG

Cryo-EM structure of Human Enterovirus D68 US/MO/14-18947 strain virion in complex with pleconaril


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.70 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Isoxazole-3-Carboxamide Derivatives of Pleconaril Destabilize the Viral Capsid of Enterovirus-D68

Lane, T.Fu, J.Sherry, B.Tarbet, B.Hurst, B.L.Riabova, O.Kazakova, E.Egorova, A.Clarke, P.Leser, S.Frost, J.Rudy, M.Tyler, K.Klose, T.Kuhn, R.J.Makarov, V.Ekins, S.

To be published.

Macromolecules
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Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
viral protein 1A296enterovirus D68Mutation(s): 0 
EC: 3.4.22.29 (UniProt), 3.6.1.15 (UniProt), 3.4.22.28 (UniProt), 2.7.7.48 (UniProt)
UniProt
Find proteins for A0A097BW12 (Human enterovirus D68)
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UniProt GroupA0A097BW12
Protein Feature View
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Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
viral protein 3B [auth C]247enterovirus D68Mutation(s): 0 
EC: 3.4.22.29 (UniProt), 3.6.1.15 (UniProt), 3.4.22.28 (UniProt), 2.7.7.48 (UniProt)
UniProt
Find proteins for A0A097BW12 (Human enterovirus D68)
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Go to UniProtKB:  A0A097BW12
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UniProt GroupA0A097BW12
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Entity ID: 3
MoleculeChainsSequence LengthOrganismDetailsImage
viral protein 2C [auth B]238enterovirus D68Mutation(s): 0 
EC: 3.4.22.29 (UniProt), 3.6.1.15 (UniProt), 3.4.22.28 (UniProt), 2.7.7.48 (UniProt)
UniProt
Find proteins for A0A097BW12 (Human enterovirus D68)
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UniProt GroupA0A097BW12
Protein Feature View
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Entity ID: 4
MoleculeChainsSequence LengthOrganismDetailsImage
viral protein 4D68enterovirus D68Mutation(s): 0 
EC: 3.4.22.29 (UniProt), 3.6.1.15 (UniProt), 3.4.22.28 (UniProt), 2.7.7.48 (UniProt)
UniProt
Find proteins for A0A097BW12 (Human enterovirus D68)
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Go to UniProtKB:  A0A097BW12
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UniProt GroupA0A097BW12
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  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
W11 (Subject of Investigation/LOI)
Query on W11

Download Ideal Coordinates CCD File 
E [auth A]3-{3,5-DIMETHYL-4-[3-(3-METHYL-ISOXAZOL-5-YL)-PROPOXY]-PHENYL}-5-TRIFLUOROMETHYL-[1,2,4]OXADIAZOLE
C18 H18 F3 N3 O3
KQOXLKOJHVFTRN-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.70 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)United StatesR01-AI011219

Revision History  (Full details and data files)

  • Version 1.0: 2023-01-25
    Type: Initial release