7T93

Crystal Structure of Fumarate hydratase class II from Mycobacterium ulcerans in complex with L-Malate

• PDB DOI: https://doi.org/10.2210/pdb7T93/pdb

• Classification: LYASE
• Organism(s): Mycobacterium ulcerans Agy99
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2021-12-17 Released: 2022-04-13 
• Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)
• Funding Organization(s): Not funded

---

Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.65 Å
• R-Value Free: 0.161 
• R-Value Work: 0.138 
• R-Value Observed: 0.138 

Literature

Crystal Structure of Fumarate hydratase class II from Mycobacterium ulcerans in complex with L-Malate

DeBouver, N.D., Abendroth, J., Lorimer, D.D., Horanyi, P.S., Edwards, T.E.

To be published.

Biological Assembly 1  

Global Symmetry: Dihedral - D2  (Explore in 3D)
Global Stoichiometry: Homo 4-mer - A4 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: gel filtration

Macromolecule Content

• Total Structure Weight: 210.81 kDa 
• Atom Count: 16,112 
• Modelled Residue Count: 1,841 
• Deposited Residue Count: 1,984 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Fumarate hydratase class II	A, B, C, D	496	Mycobacterium ulcerans Agy99	Mutation(s): 0  Gene Names: fum, fumC, MUL_0181 EC: 4.2.1.2
UniProt
Find proteins for A0PKR5 (Mycobacterium ulcerans (strain Agy99)) Explore A0PKR5  Go to UniProtKB:  A0PKR5

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
LMR (Subject of Investigation/LOI)	E [auth A], F [auth B], H [auth B], I [auth C], J [auth C], K [auth D]	(2S)-2-hydroxybutanedioic acid C4 H6 O5 BJEPYKJPYRNKOW-REOHCLBHSA-N
MPD	G [auth B]	(4S)-2-METHYL-2,4-PENTANEDIOL C6 H14 O2 SVTBMSDMJJWYQN-YFKPBYRVSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.65 Å
• R-Value Free: 0.161 
• R-Value Work: 0.138 
• R-Value Observed: 0.138 
• Space Group: P 2₁ 2₁ 2₁
• Diffraction Data: https://doi.org/10.18430/M37T93

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 98.04	α = 90
b = 120.82	β = 90
c = 158.78	γ = 90

Software Package:

Software Name	Purpose
XDS	data reduction
XSCALE	data scaling
PHENIX	refinement
PDB_EXTRACT	data extraction
MoRDa	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2022-04-13 
Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)

---

Funding Organization	Location	Grant Number
Not funded		--

Revision History  

• Version 1.0: 2022-04-13
  Type: Initial release
  
• Version 1.1: 2023-10-18
  Changes: Data collection, Refinement description