7T8T | pdb_00007t8t

CryoEM structure of PLCg1

PDB DOI: https://doi.org/10.2210/pdb7T8T/pdb
EM Map EMD-25745: EMDB EMDataResource

Classification: HYDROLASE
Organism(s): Rattus norvegicus
Expression System: Trichoplusia ni
Mutation(s): Yes

Deposited: 2021-12-17 Released: 2022-12-21
Deposition Author(s): Endo-Streeter, S., Sondek, J.
Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.68 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Validation slider image for 7T8T

This is version 1.1 of the entry. See complete history.

Literature

CryoEM structure of PLCg1

Endo-Streeter, S., Sondek, J.

To be published.

Macromolecule Content

Total Structure Weight: 138.23 kDa
Atom Count: 8,808
Modeled Residue Count: 1,086
Deposited Residue Count: 1,196
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma	A	1,196	Rattus norvegicus	Mutation(s): 1 Gene Names: Plcg1, rCG_32419 EC: 3.1.4.11
UniProt
Find proteins for P10686 (Rattus norvegicus) Explore P10686 Go to UniProtKB: P10686
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P10686
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
CA (Subject of Investigation/LOI) Query on CA Download:Ideal Coordinates CCD File SDF format, chain B [auth A] MOL2 format, chain B [auth A] mmCIF format, chain B [auth A]	B [auth A]	CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N		Interactions Focus chain B [auth A] Interactions & Density Focus chain B [auth A]

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 3.68 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	PHENIX	1.19.2_4158
RECONSTRUCTION	cryoSPARC	3.2

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2022-12-21

Deposition Author(s):

Endo-Streeter, S.

Funding Organization	Location	Grant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)	United States	R01-GM057391

Revision History (Full details and data files)

Version 1.0: 2022-12-21
Type: Initial release
Version 1.1: 2024-06-05
Changes: Data collection, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.