7T8G

G93A mutant of human SOD1 bound with MR6-8-2 in P21 space group

PDB DOI: https://doi.org/10.2210/pdb7T8G/pdb

Classification: OXIDOREDUCTASE
Organism(s): Homo sapiens
Expression System: Escherichia coli BL21(DE3)
Mutation(s): Yes

Deposited: 2021-12-16 Released: 2023-01-25
Deposition Author(s): Amporndanai, K., Hasnain, S.S.
Funding Organization(s): Other private

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.35 Å
R-Value Free: 0.202
R-Value Work: 0.189
R-Value Observed: 0.190

wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.1 of the entry. See complete history.

Literature

Disease Onset and its course are delayed by on-target Cellular SOD1 Engagement of Organo-selenium drug compounds for Amyotrophic Lateral Sclerosis

Amporndanai, K., Watanabe, S., Awais, R., Latham, C., O Neill, P.M., Yamanaka, K., Hasnain, S.S.

To be published.

Macromolecule Content

Total Structure Weight: 32.86 kDa
Atom Count: 2,598
Modelled Residue Count: 306
Deposited Residue Count: 306
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Superoxide dismutase [Cu-Zn]	A, B [auth F]	153	Homo sapiens	Mutation(s): 1 Gene Names: SOD1 EC: 1.15.1.1
UniProt & NIH Common Fund Data Resources
Find proteins for P00441 (Homo sapiens) Explore P00441 Go to UniProtKB: P00441
PHAROS: P00441 GTEx: ENSG00000142168
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P00441
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 5 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
Q8H (Subject of Investigation/LOI) Query on Q8H Download Ideal Coordinates CCD File SDF format, chain D [auth A] SDF format, chain H [auth F] MOL2 format, chain D [auth A] MOL2 format, chain H [auth F]	D [auth A], H [auth F]	~{N}-(pyridin-3-ylmethyl)-2-selanyl-benzamide C₁₃ H₁₂ N₂ O Se JMKKHOHSFFBFIN-UHFFFAOYSA-N		Interactions Focus chain D [auth A] Focus chain H [auth F] Interactions & Density Focus chain D [auth A] Focus chain H [auth F]
SO4 Query on SO4 Download Ideal Coordinates CCD File SDF format, chain G [auth A] SDF format, chain L [auth F] MOL2 format, chain G [auth A] MOL2 format, chain L [auth F]	G [auth A], L [auth F]	SULFATE ION O₄ S QAOWNCQODCNURD-UHFFFAOYSA-L		Interactions Focus chain G [auth A] Focus chain L [auth F] Interactions & Density Focus chain G [auth A] Focus chain L [auth F]
SE Query on SE Download Ideal Coordinates CCD File SDF format, chain K [auth F] MOL2 format, chain K [auth F]	K [auth F]	SELENIUM ATOM Se SPVXKVOXSXTJOY-UHFFFAOYSA-N		Interactions Focus chain K [auth F] Interactions & Density Focus chain K [auth F]
ZN Query on ZN Download Ideal Coordinates CCD File SDF format, chain E [auth A] SDF format, chain I [auth F] SDF format, chain C [auth A] SDF format, chain J [auth F] MOL2 format, chain E [auth A] MOL2 format, chain I [auth F] MOL2 format, chain C [auth A] MOL2 format, chain J [auth F]	C [auth A], E [auth A], I [auth F], J [auth F]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N		Interactions Focus chain C [auth A] Focus chain E [auth A] Focus chain I [auth F] Focus chain J [auth F] Interactions & Density Focus chain C [auth A] Focus chain E [auth A] Focus chain I [auth F] Focus chain J [auth F]
ACT Query on ACT Download Ideal Coordinates CCD File SDF format, chain F [auth A] MOL2 format, chain F [auth A]	F [auth A]	ACETATE ION C₂ H₃ O₂ QTBSBXVTEAMEQO-UHFFFAOYSA-M		Interactions Focus chain F [auth A] Interactions & Density Focus chain F [auth A]