7T86

Crystal Structure of Fab CR5133 / Phospho-SD Peptide Complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.90 Å
  • R-Value Free: 0.222 
  • R-Value Work: 0.196 
  • R-Value Observed: 0.196 

wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 


This is version 1.3 of the entry. See complete history


Literature

Multivalent human antibody-centyrin fusion protein to prevent and treat Staphylococcus aureus infections.

Buckley, P.T.Chan, R.Fernandez, J.Luo, J.Lacey, K.A.DuMont, A.L.O'Malley, A.Brezski, R.J.Zheng, S.Malia, T.Whitaker, B.Zwolak, A.Payne, A.Clark, D.Sigg, M.Lacy, E.R.Kornilova, A.Kwok, D.McCarthy, S.Wu, B.Morrow, B.Nemeth-Seay, J.Petley, T.Wu, S.Strohl, W.R.Lynch, A.S.Torres, V.J.

(2023) Cell Host Microbe 31: 751-765.e11

  • DOI: https://doi.org/10.1016/j.chom.2023.04.004
  • Primary Citation of Related Structures:  
    7T82, 7T86, 7T87

  • PubMed Abstract: 

    Treating and preventing infections by antimicrobial-resistant bacterial pathogens is a worldwide problem. Pathogens such as Staphylococcus aureus produce an array of virulence determinants, making it difficult to identify single targets for the development of vaccines or monoclonal therapies. We described a human-derived anti-S. aureus monoclonal antibody (mAb)-centyrin fusion protein ("mAbtyrin") that simultaneously targets multiple bacterial adhesins, resists proteolysis by bacterial protease GluV8, avoids Fc engagement by S. aureus IgG-binding proteins SpA and Sbi, and neutralizes pore-forming leukocidins via fusion with anti-toxin centyrins, while maintaining Fc- and complement-mediated functions. Compared with the parental mAb, mAbtyrin protected human phagocytes and boosted phagocyte-mediated killing. The mAbtyrin also reduced pathology, reduced bacterial burden, and protected from different types of infections in preclinical animal models. Finally, mAbtyrin synergized with vancomycin, enhancing pathogen clearance in an animal model of bacteremia. Altogether, these data establish the potential of multivalent mAbs for treating and preventing S. aureus diseases.


  • Organizational Affiliation

    Janssen Research & Development, 1400 McKean Road, Spring House, PA, USA. Electronic address: pbuckle5@its.jnj.com.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Antibody Fab CR5133 Light ChainA [auth L],
C [auth A],
E [auth C],
G [auth E]
213Homo sapiensMutation(s): 0 
Entity Groups  
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Sequence Annotations
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Antibody Fab CR5133 Heavy ChainB [auth H],
D [auth B],
F [auth D],
H [auth F]
229Homo sapiensMutation(s): 0 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations
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  • Reference Sequence

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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Phospho-SD PeptideI [auth G],
J [auth I],
K [auth J],
L [auth K]
12synthetic constructMutation(s): 0 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.90 Å
  • R-Value Free: 0.222 
  • R-Value Work: 0.196 
  • R-Value Observed: 0.196 
  • Space Group: P 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 81.981α = 70.89
b = 82.862β = 84.41
c = 90.652γ = 62.1
Software Package:
Software NamePurpose
PHENIXrefinement
Aimlessdata scaling
PDB_EXTRACTdata extraction
DENZOdata reduction
PHASERphasing

Structure Validation

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Ligand Structure Quality Assessment 


Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Not funded--

Revision History  (Full details and data files)

  • Version 1.0: 2023-01-11
    Type: Initial release
  • Version 1.1: 2023-05-10
    Changes: Database references
  • Version 1.2: 2023-05-24
    Changes: Database references
  • Version 1.3: 2023-10-25
    Changes: Data collection, Refinement description