7T25

OspA-Fab 319-44 complex structure

PDB DOI: https://doi.org/10.2210/pdb7T25/pdb

Classification: IMMUNE SYSTEM
Organism(s): Homo sapiens, Borreliella burgdorferi B31
Expression System: Cricetulus griseus, Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2021-12-03 Released: 2022-12-14
Deposition Author(s): Rudolph, M.J.
Funding Organization(s): National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.25 Å
R-Value Free: 0.233
R-Value Work: 0.191
R-Value Observed: 0.193

wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.1 of the entry. See complete history.

Literature

Structural analysis of OspA-31944 complex

Rudolph, M.J.

To be published.

Macromolecule Content

Total Structure Weight: 152.35 kDa
Atom Count: 11,187
Modelled Residue Count: 1,340
Deposited Residue Count: 1,388
Unique protein chains: 3

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
319-44 Fab heavy chain	A [auth H], C [auth A]	223	Homo sapiens	Mutation(s): 0
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations Expand
Reference Sequence

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Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
319-44 Fab light chain	B [auth L], D [auth B]	215	Homo sapiens	Mutation(s): 0
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations Expand
Reference Sequence

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(by identity cutoff) | 3D Structure

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
Outer surface protein A	E, F [auth C]	256	Borreliella burgdorferi B31	Mutation(s): 0 Gene Names: ospA, BB_A15
UniProt
Find proteins for P0CL66 (Borreliella burgdorferi (strain ATCC 35210 / DSM 4680 / CIP 102532 / B31)) Explore P0CL66 Go to UniProtKB: P0CL66
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P0CL66
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 4 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
NAG Query on NAG Download Ideal Coordinates CCD File SDF format, chain M [auth H] SDF format, chain Y [auth A] MOL2 format, chain M [auth H] MOL2 format, chain Y [auth A]	M [auth H], Y [auth A]	2-acetamido-2-deoxy-beta-D-glucopyranose C₈ H₁₅ N O₆ OVRNDRQMDRJTHS-FMDGEEDCSA-N		Interactions Focus chain M [auth H] Focus chain Y [auth A] Interactions & Density Focus chain M [auth H] Focus chain Y [auth A]
IOD Query on IOD Download Ideal Coordinates CCD File SDF format, chain HA [auth B] SDF format, chain Q [auth L] SDF format, chain R [auth L] SDF format, chain X [auth A] SDF format, chain Z [auth B] MOL2 format, chain HA [auth B] MOL2 format, chain Q [auth L] MOL2 format, chain R [auth L] MOL2 format, chain X [auth A] MOL2 format, chain Z [auth B]	HA [auth B], Q [auth L], R [auth L], X [auth A], Z [auth B]	IODIDE ION I XMBWDFGMSWQBCA-UHFFFAOYSA-M		Interactions Focus chain HA [auth B] Focus chain Q [auth L] Focus chain R [auth L] Focus chain X [auth A] Focus chain Z [auth B] Interactions & Density Focus chain HA [auth B] Focus chain Q [auth L] Focus chain R [auth L] Focus chain X [auth A] Focus chain Z [auth B]
EDO Query on EDO Download Ideal Coordinates CCD File SDF format, chain S [auth L] MOL2 format, chain S [auth L]	S [auth L]	1,2-ETHANEDIOL C₂ H₆ O₂ LYCAIKOWRPUZTN-UHFFFAOYSA-N		Interactions Focus chain S [auth L] Interactions & Density Focus chain S [auth L]
CL Query on CL Download Ideal Coordinates CCD File SDF format, chain AA [auth B] SDF format, chain BA [auth B] SDF format, chain CA [auth B] SDF format, chain DA [auth B] SDF format, chain EA [auth B] SDF format, chain FA [auth B] SDF format, chain G [auth H] SDF format, chain GA [auth B] SDF format, chain H SDF format, chain I [auth H] SDF format, chain IA [auth E] SDF format, chain J [auth H] SDF format, chain JA [auth E] SDF format, chain K [auth H] SDF format, chain KA [auth E] SDF format, chain L [auth H] SDF format, chain LA [auth E] SDF format, chain MA [auth C] SDF format, chain N [auth L] SDF format, chain NA [auth C] SDF format, chain O [auth L] SDF format, chain OA [auth C] SDF format, chain P [auth L] SDF format, chain PA [auth C] SDF format, chain QA [auth C] SDF format, chain T [auth A] SDF format, chain U [auth A] SDF format, chain V [auth A] SDF format, chain W [auth A] MOL2 format, chain AA [auth B] MOL2 format, chain BA [auth B] MOL2 format, chain CA [auth B] MOL2 format, chain DA [auth B] MOL2 format, chain EA [auth B] MOL2 format, chain FA [auth B] MOL2 format, chain G [auth H] MOL2 format, chain GA [auth B] MOL2 format, chain H MOL2 format, chain I [auth H] MOL2 format, chain IA [auth E] MOL2 format, chain J [auth H] MOL2 format, chain JA [auth E] MOL2 format, chain K [auth H] MOL2 format, chain KA [auth E] MOL2 format, chain L [auth H] MOL2 format, chain LA [auth E] MOL2 format, chain MA [auth C] MOL2 format, chain N [auth L] MOL2 format, chain NA [auth C] MOL2 format, chain O [auth L] MOL2 format, chain OA [auth C] MOL2 format, chain P [auth L] MOL2 format, chain PA [auth C] MOL2 format, chain QA [auth C] MOL2 format, chain T [auth A] MOL2 format, chain U [auth A] MOL2 format, chain V [auth A] MOL2 format, chain W [auth A]	AA [auth B] BA [auth B] CA [auth B] DA [auth B] EA [auth B] AA [auth B], BA [auth B], CA [auth B], DA [auth B], EA [auth B], FA [auth B], G [auth H], GA [auth B], H, I [auth H], IA [auth E], J [auth H], JA [auth E], K [auth H], KA [auth E], L [auth H], LA [auth E], MA [auth C], N [auth L], NA [auth C], O [auth L], OA [auth C], P [auth L], PA [auth C], QA [auth C], T [auth A], U [auth A], V [auth A], W [auth A]	CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M		Interactions Focus chain AA [auth B] Focus chain BA [auth B] Focus chain CA [auth B] Focus chain DA [auth B] Focus chain EA [auth B] Focus chain FA [auth B] Focus chain G [auth H] Focus chain GA [auth B] Focus chain H Focus chain I [auth H] Focus chain IA [auth E] Focus chain J [auth H] Focus chain JA [auth E] Focus chain K [auth H] Focus chain KA [auth E] Focus chain L [auth H] Focus chain LA [auth E] Focus chain MA [auth C] Focus chain N [auth L] Focus chain NA [auth C] Focus chain O [auth L] Focus chain OA [auth C] Focus chain P [auth L] Focus chain PA [auth C] Focus chain QA [auth C] Focus chain T [auth A] Focus chain U [auth A] Focus chain V [auth A] Focus chain W [auth A] Interactions & Density Focus chain AA [auth B] Focus chain BA [auth B] Focus chain CA [auth B] Focus chain DA [auth B] Focus chain EA [auth B] Focus chain FA [auth B] Focus chain G [auth H] Focus chain GA [auth B] Focus chain H Focus chain I [auth H] Focus chain IA [auth E] Focus chain J [auth H] Focus chain JA [auth E] Focus chain K [auth H] Focus chain KA [auth E] Focus chain L [auth H] Focus chain LA [auth E] Focus chain MA [auth C] Focus chain N [auth L] Focus chain NA [auth C] Focus chain O [auth L] Focus chain OA [auth C] Focus chain P [auth L] Focus chain PA [auth C] Focus chain QA [auth C] Focus chain T [auth A] Focus chain U [auth A] Focus chain V [auth A] Focus chain W [auth A]