7SX1 | pdb_00007sx1

human triosephosphate isomerase mutant v154m

PDB DOI: https://doi.org/10.2210/pdb7SX1/pdb

Classification: ISOMERASE
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2021-11-22 Released: 2022-11-30
Deposition Author(s): Romero, J.M.
Funding Organization(s): Agencia Nacional de Promocion Cientifica y Tecnologica (FONCYT)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.23 Å
R-Value Free:
0.225 (Depositor), 0.234 (DCC)
R-Value Work:
0.168 (Depositor), 0.177 (DCC)
R-Value Observed:
0.171 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Validation slider image for 7SX1

This is version 1.1 of the entry. See complete history.

Literature

human triosephosphate isomerase mutant v154m

Romero, J.M.

To be published.

Macromolecule Content

Total Structure Weight: 53.53 kDa
Atom Count: 4,004
Modeled Residue Count: 491
Deposited Residue Count: 498
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Triosephosphate isomerase	A, B	249	Homo sapiens	Mutation(s): 1 Gene Names: TPI1, TPI EC: 5.3.1.1 (PDB Primary Data), 4.2.3.3 (PDB Primary Data)
UniProt & NIH Common Fund Data Resources
Find proteins for P60174 (Homo sapiens) Explore P60174 Go to UniProtKB: P60174
PHAROS: P60174 GTEx: ENSG00000111669
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P60174
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
IPA Query on IPA Download:Ideal Coordinates CCD File SDF format, chain C [auth B] MOL2 format, chain C [auth B] mmCIF format, chain C [auth B]	C [auth B]	ISOPROPYL ALCOHOL C₃ H₈ O KFZMGEQAYNKOFK-UHFFFAOYSA-N		Interactions Focus chain C [auth B] Interactions & Density Focus chain C [auth B]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.23 Å
R-Value Free: 0.225 (Depositor), 0.234 (DCC)
R-Value Work: 0.168 (Depositor), 0.177 (DCC)
R-Value Observed: 0.171 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 65.46	α = 90
b = 75.4	β = 90
c = 91.56	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
Aimless	data scaling
PDB_EXTRACT	data extraction
MOSFLM	data reduction
REFMAC	phasing

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2022-11-30

Deposition Author(s):

Funding Organization	Location	Grant Number
Agencia Nacional de Promocion Cientifica y Tecnologica (FONCYT)	Argentina	--

Revision History (Full details and data files)

Version 1.0: 2022-11-30
Type: Initial release
Version 1.1: 2023-10-25
Changes: Data collection, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.