7SQH | pdb_00007sqh

Structure of the human proton-activated chloride channel ASOR in desensitized conformation

  • Classification: MEMBRANE PROTEIN
  • Organism(s): Homo sapiens
  • Expression System: Homo sapiens
  • Mutation(s): No 
  • Membrane Protein: Yes  OPMmpstruc

  • Deposited: 2021-11-05 Released: 2022-02-23 
  • Deposition Author(s): Long, S.B., Wang, C., Delgado, B.
  • Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS), National Institutes of Health/National Cancer Institute (NIH/NCI)

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.50 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report

Validation slider image for 7SQH

This is version 1.1 of the entry. See complete history

Literature

Gating choreography and mechanism of the human proton-activated chloride channel ASOR.

Wang, C.Polovitskaya, M.M.Delgado, B.D.Jentsch, T.J.Long, S.B.

(2022) Sci Adv 8: eabm3942-eabm3942

  • DOI: https://doi.org/10.1126/sciadv.abm3942
  • Primary Citation Related Structures: 
    7SQF, 7SQG, 7SQH

  • PubMed Abstract: 

    The proton-activated chloride channel ASOR (TMEM206/PAC) permeates anions across cellular membranes in response to acidification, thereby enhancing acid-induced cell death and regulating endocytosis. The molecular mechanisms of pH-dependent control are not understood, in part because structural information for an activated conformation of ASOR is lacking. Here, we reconstitute function from purified protein and present a 3.1-Å-resolution cryo-electron microscopy structure of human ASOR at acidic pH in an activated conformation. The work contextualizes a previous acidic pH structure as a desensitized conformation. Combined with electrophysiological studies and high-resolution structures of resting and desensitized states, the work reveals mechanisms of proton sensing and ion pore gating. Clusters of extracellular acidic residues function as pH sensors and coalesce when protonated. Ensuing conformational changes induce metamorphosis of transmembrane helices to fashion an ion conduction pathway unique to the activated conformation. The studies identify a new paradigm of channel gating in this ubiquitous ion channel.


  • Organizational Affiliation
    • Structural Biology Program, Memorial Sloan Kettering Cancer Center, 1275 York Avenue, New York, NY 10065, USA.

Macromolecule Content 

  • Total Structure Weight: 122.93 kDa 
  • Atom Count: 6,954 
  • Modeled Residue Count: 849 
  • Deposited Residue Count: 1,050 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Proton-activated chloride channel
A, B, C
350Homo sapiensMutation(s): 0 
Gene Names: PACC1C1orf75TMEM206
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for Q9H813 (Homo sapiens)
Explore Q9H813 
Go to UniProtKB:  Q9H813
PHAROS:  Q9H813
GTEx:  ENSG00000065600 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9H813
Glycosylation
Glycosylation Sites: 4Go to GlyGen: Q9H813-1
Sequence Annotations
Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
NAG

Query on NAG



Download:Ideal Coordinates CCD File
D [auth A]
E [auth A]
F [auth A]
G [auth A]
H [auth B]
D [auth A],
E [auth A],
F [auth A],
G [auth A],
H [auth B],
I [auth B],
J [auth B],
K [auth B],
L [auth C],
M [auth C],
N [auth C],
O [auth C]
2-acetamido-2-deoxy-beta-D-glucopyranose
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.50 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.19.1-4122
RECONSTRUCTIONcryoSPARCv3.1.0

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesR35GM131921
National Institutes of Health/National Cancer Institute (NIH/NCI)United StatesP30CA008748

Revision History  (Full details and data files)

  • Version 1.0: 2022-02-23
    Type: Initial release
  • Version 1.1: 2024-10-23
    Changes: Data collection, Structure summary