7SFY | pdb_00007sfy

Crystal structure of human Mis18ab_cc

PDB DOI: https://doi.org/10.2210/pdb7SFY/pdb

Classification: CELL CYCLE
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2021-10-04 Released: 2023-04-12
Deposition Author(s): Park, S.H., Cho, U.
Funding Organization(s): National Institutes of Health/National Institute of Diabetes and Digestive and Kidney Disease (NIH/NIDDK)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.50 Å
R-Value Free:
0.280 (Depositor), 0.280 (DCC)
R-Value Work:
0.248 (Depositor), 0.251 (DCC)
R-Value Observed:
0.249 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 7SFY

This is version 1.1 of the entry. See complete history.

Literature

Structural Basis for Mis18 Complex Assembly: Implications for Centromere Maintenance

Park, S.H., Shimanaka, K., Cho, U.

To be published.

Macromolecule Content

Total Structure Weight: 30.75 kDa
Atom Count: 1,643
Modeled Residue Count: 202
Deposited Residue Count: 268
Unique protein chains: 2

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Protein Mis18-alpha	A, B, D, E	46	Homo sapiens	Mutation(s): 0 Gene Names: MIS18A, C21orf45, C21orf46, FASP1
UniProt & NIH Common Fund Data Resources
Find proteins for Q9NYP9 (Homo sapiens) Explore Q9NYP9 Go to UniProtKB: Q9NYP9
PHAROS: Q9NYP9 GTEx: ENSG00000159055
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q9NYP9
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Protein Mis18-beta	C, F	42	Homo sapiens	Mutation(s): 0 Gene Names: OIP5, MIS18B
UniProt & NIH Common Fund Data Resources
Find proteins for O43482 (Homo sapiens) Explore O43482 Go to UniProtKB: O43482
PHAROS: O43482 GTEx: ENSG00000104147
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	O43482
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.50 Å
R-Value Free: 0.280 (Depositor), 0.280 (DCC)
R-Value Work: 0.248 (Depositor), 0.251 (DCC)
R-Value Observed: 0.249 (Depositor)

Space Group: C 2 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 77.501	α = 90
b = 101.815	β = 90
c = 88.563	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
xia2	data reduction
xia2	data scaling
AutoSol	phasing

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2023-04-12

Deposition Author(s):

Funding Organization	Location	Grant Number
National Institutes of Health/National Institute of Diabetes and Digestive and Kidney Disease (NIH/NIDDK)	United States	DK111465

Revision History (Full details and data files)

Version 1.0: 2023-04-12
Type: Initial release
Version 1.1: 2024-05-22
Changes: Data collection

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.