7SDE | pdb_00007sde

Cryo-EM structure of Nse5/6 heterodimer

PDB DOI: https://doi.org/10.2210/pdb7SDE/pdb
EM Map EMD-23517: EMDB EMDataResource

Classification: STRUCTURAL PROTEIN
Organism(s): Saccharomyces cerevisiae S288C
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2021-09-29 Released: 2021-10-13
Deposition Author(s): Yu, Y., Patel, D.J., Zhao, X.L.
Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.20 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

Validation slider image for 7SDE

This is version 1.1 of the entry. See complete history.

Literature

The cryo-EM structure of Nse5/6 complex with the C terminal part of Nse5

Yu, Y., Patel, D.J.

To be published.

Macromolecule Content

Total Structure Weight: 131.63 kDa
Atom Count: 5,734
Modeled Residue Count: 726
Deposited Residue Count: 1,141
Unique protein chains: 2

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Non-structural maintenance of chromosome element 5	A	555	Saccharomyces cerevisiae S288C	Mutation(s): 0 Gene Names: NSE5, YML023C
UniProt
Find proteins for Q03718 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore Q03718 Go to UniProtKB: Q03718
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q03718
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Ubiquitin-like protein SMT3,DNA repair protein KRE29 chimera	B	586	Saccharomyces cerevisiae S288C	Mutation(s): 0 Gene Names: SMT3, YDR510W, D9719.15, KRE29, YER038C
UniProt
Find proteins for P40026 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P40026 Go to UniProtKB: P40026
Find proteins for Q12306 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore Q12306 Go to UniProtKB: Q12306
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Groups	P40026 Q12306
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 3.20 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

Structure Validation

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View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2021-10-13

Deposition Author(s):

Funding Organization	Location	Grant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)	United States	R01GM131058

Revision History (Full details and data files)

Version 1.0: 2021-10-13
Type: Initial release
Version 1.1: 2024-06-05
Changes: Data collection

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.