7SA6

fHbp mutant 2416 bound to Fab JAR5

PDB DOI: https://doi.org/10.2210/pdb7SA6/pdb

Classification: IMMUNE SYSTEM
Organism(s): Neisseria meningitidis serogroup B, Mus musculus
Expression System: Escherichia coli, Homo sapiens
Mutation(s): No

Deposited: 2021-09-22 Released: 2022-10-05
Deposition Author(s): Chesterman, C., Malito, E., Bottomley, M.J.
Funding Organization(s): Other government

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.90 Å
R-Value Free: 0.290
R-Value Work: 0.249
R-Value Observed: 0.251

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Active Learning for Rapid Design: An iterative AI approach for accelerated vaccine design that combines active machine learning and high-throughput experimental evaluation

Chesterman, C., Desautels, T., Sierra, L.-J., Arrildt, K., Zemla, A., Lau, E.Y., Sundaram, S., Laliberte, J., Chen, L., Ruby, A., Mednikov, M., Bertholet, S., Yu, D., Luisi, K., Malito, E., Mallett, C., Bottomley, M.J., Berg, R., Faissol, D.

To be published.

Macromolecule Content

Total Structure Weight: 81.01 kDa
Atom Count: 4,158
Modelled Residue Count: 612
Deposited Residue Count: 738
Unique protein chains: 3

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Factor H-binding protein 2416	A	270	Neisseria meningitidis serogroup B	Mutation(s): 0 Gene Names: fHbp
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations Expand
Reference Sequence

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(by identity cutoff) | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
JAR5 Heavy Chain	B [auth H]	252	Mus musculus	Mutation(s): 0
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations Expand
Reference Sequence

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(by identity cutoff) | 3D Structure

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
JAR5 Light Chain	C [auth L]	216	Mus musculus	Mutation(s): 0
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.90 Å
R-Value Free: 0.290
R-Value Work: 0.249
R-Value Observed: 0.251
Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 148.99	α = 90
b = 66.36	β = 93.429
c = 105.37	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
XDS	data scaling
PHASER	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2022-10-05

Deposition Author(s):

Bottomley, M.J.

Funding Organization	Location	Grant Number
Other government		--

Revision History (Full details and data files)

Version 1.0: 2022-10-05
Type: Initial release
Version 1.1: 2023-10-18
Changes: Data collection, Refinement description

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.