7S5N | pdb_00007s5n

Crystal Structure of a Putative uncharacterized protein from Mycobacterium marinum

PDB DOI: https://doi.org/10.2210/pdb7S5N/pdb

Classification: UNKNOWN FUNCTION
Organism(s): Mycobacterium marinum M
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2021-09-10 Released: 2021-09-22
Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.85 Å
R-Value Free:
0.219 (Depositor), 0.220 (DCC)
R-Value Work:
0.184 (Depositor), 0.180 (DCC)
R-Value Observed:
0.185 (Depositor)

Starting Model: in silico
View more details

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Crystal Structure of a Putative uncharacterized protein from Mycobacterium marinum

Abendroth, J., Dranow, D.M., Sankaran, B., Lorimer, D.D., Horanyi, P.S., Edwards, T.E.

To be published.

Macromolecule Content

Total Structure Weight: 103.66 kDa
Atom Count: 6,686
Modeled Residue Count: 750
Deposited Residue Count: 882
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
MymaA.17060.a	A, B, C, D, E A, B, C, D, E, F	147	Mycobacterium marinum M	Mutation(s): 0 Gene Names: MMAR_1385
UniProt
Find proteins for B2HFJ9 (Mycobacterium marinum (strain ATCC BAA-535 / M)) Explore B2HFJ9 Go to UniProtKB: B2HFJ9
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	B2HFJ9
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
MPD Query on MPD Download Ideal Coordinates CCD File SDF format, chain N [auth C] SDF format, chain S [auth E] SDF format, chain K [auth B] MOL2 format, chain N [auth C] MOL2 format, chain S [auth E] MOL2 format, chain K [auth B] mmCIF format, chain N [auth C] mmCIF format, chain S [auth E] mmCIF format, chain K [auth B]	K [auth B], N [auth C], S [auth E]	(4S)-2-METHYL-2,4-PENTANEDIOL C₆ H₁₄ O₂ SVTBMSDMJJWYQN-YFKPBYRVSA-N		Interactions Focus chain K [auth B] Focus chain N [auth C] Focus chain S [auth E] Interactions & Density Focus chain K [auth B] Focus chain N [auth C] Focus chain S [auth E]
SO4 Query on SO4 Download Ideal Coordinates CCD File SDF format, chain G [auth A] SDF format, chain H [auth A] SDF format, chain I [auth B] SDF format, chain J [auth B] SDF format, chain M [auth C] SDF format, chain O [auth D] SDF format, chain P [auth D] SDF format, chain Q [auth E] SDF format, chain R [auth E] SDF format, chain T [auth F] SDF format, chain U [auth F] SDF format, chain L [auth C] MOL2 format, chain G [auth A] MOL2 format, chain H [auth A] MOL2 format, chain I [auth B] MOL2 format, chain J [auth B] MOL2 format, chain M [auth C] MOL2 format, chain O [auth D] MOL2 format, chain P [auth D] MOL2 format, chain Q [auth E] MOL2 format, chain R [auth E] MOL2 format, chain T [auth F] MOL2 format, chain U [auth F] MOL2 format, chain L [auth C] mmCIF format, chain G [auth A] mmCIF format, chain H [auth A] mmCIF format, chain I [auth B] mmCIF format, chain J [auth B] mmCIF format, chain M [auth C] mmCIF format, chain O [auth D] mmCIF format, chain P [auth D] mmCIF format, chain Q [auth E] mmCIF format, chain R [auth E] mmCIF format, chain T [auth F] mmCIF format, chain U [auth F] mmCIF format, chain L [auth C]	G [auth A] H [auth A] I [auth B] J [auth B] L [auth C] G [auth A], H [auth A], I [auth B], J [auth B], L [auth C], M [auth C], O [auth D], P [auth D], Q [auth E], R [auth E], T [auth F], U [auth F]	SULFATE ION O₄ S QAOWNCQODCNURD-UHFFFAOYSA-L		Interactions Focus chain G [auth A] Focus chain H [auth A] Focus chain I [auth B] Focus chain J [auth B] Focus chain L [auth C] Focus chain M [auth C] Focus chain O [auth D] Focus chain P [auth D] Focus chain Q [auth E] Focus chain R [auth E] Focus chain T [auth F] Focus chain U [auth F] Interactions & Density Focus chain G [auth A] Focus chain H [auth A] Focus chain I [auth B] Focus chain J [auth B] Focus chain L [auth C] Focus chain M [auth C] Focus chain O [auth D] Focus chain P [auth D] Focus chain Q [auth E] Focus chain R [auth E] Focus chain T [auth F] Focus chain U [auth F]