7RVJ

Segment from the human prion protein 169-175 YSNQNNF

• PDB DOI: https://doi.org/10.2210/pdb7RVJ/pdb

• Classification: PROTEIN FIBRIL
• Organism(s): Homo sapiens
• Mutation(s): No 


• Deposited: 2021-08-18 Released: 2022-08-24 
• Deposition Author(s): Glynn, C., Rodriguez, J.A., Hernandez, E.
• Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS), National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)

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Experimental Data Snapshot

• Method: ELECTRON CRYSTALLOGRAPHY
• Resolution: 1.00 Å
• R-Value Free: 0.233 
• R-Value Work: 0.225 
• R-Value Observed: 0.226 

Literature

Structural and Biophysical Consequences of Sequence Variation in the B2a2 Loop of Mammalian Prions

Glynn, C., Hernandez, E., Gallagher-Jones, M., Miao, J., Rodriguez, J.A.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: electron microscopy

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors.

Macromolecule Content

• Total Structure Weight: 1.77 kDa 
• Atom Count: 134 
• Modelled Residue Count: 14 
• Deposited Residue Count: 14 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Major prion protein	A, B	7	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P04156 (Homo sapiens) Explore P04156  Go to UniProtKB:  P04156
PHAROS:  P04156 GTEx:  ENSG00000171867

Experimental Data & Validation

Experimental Data

• Method: ELECTRON CRYSTALLOGRAPHY
• Resolution: 1.00 Å
• R-Value Free: 0.233 
• R-Value Work: 0.225 
• R-Value Observed: 0.226 
• Space Group: P 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 24.39	α = 86.52
b = 4.95	β = 77.16
c = 20.86	γ = 85.68

Software Package:

Software Name	Purpose
XSCALE	data scaling
BUSTER	refinement
PDB_EXTRACT	data extraction
XDS	data reduction
SHELXD	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2022-08-24 
Deposition Author(s): Glynn, C., Rodriguez, J.A., Hernandez, E.

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Funding Organization	Location	Grant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)	United States	R35GM128867
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)	United States	1F31AI143368

Revision History  

• Version 1.0: 2022-08-24
  Type: Initial release