7RSL

Seipin forms a flexible cage at lipid droplet formation sites


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.45 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Seipin forms a flexible cage at lipid droplet formation sites.

Arlt, H.Sui, X.Folger, B.Adams, C.Chen, X.Remme, R.Hamprecht, F.A.DiMaio, F.Liao, M.Goodman, J.M.Farese Jr., R.V.Walther, T.C.

(2022) Nat Struct Mol Biol 29: 194-202

  • DOI: https://doi.org/10.1038/s41594-021-00718-y
  • Primary Citation of Related Structures:  
    7RSL

  • PubMed Abstract: 

    Lipid droplets (LDs) form in the endoplasmic reticulum by phase separation of neutral lipids. This process is facilitated by the seipin protein complex, which consists of a ring of seipin monomers, with a yet unclear function. Here, we report a structure of S. cerevisiae seipin based on cryogenic-electron microscopy and structural modeling data. Seipin forms a decameric, cage-like structure with the lumenal domains forming a stable ring at the cage floor and transmembrane segments forming the cage sides and top. The transmembrane segments interact with adjacent monomers in two distinct, alternating conformations. These conformations result from changes in switch regions, located between the lumenal domains and the transmembrane segments, that are required for seipin function. Our data indicate a model for LD formation in which a closed seipin cage enables triacylglycerol phase separation and subsequently switches to an open conformation to allow LD growth and budding.


  • Organizational Affiliation

    Department of Molecular Metabolism, Harvard T. H. Chan School of Public Health, Boston, MA, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Seipin285Saccharomyces cerevisiaeMutation(s): 0 
Gene Names: SEI1FLD1YLR404W
Membrane Entity: Yes 
UniProt
Find proteins for Q06058 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore Q06058 
Go to UniProtKB:  Q06058
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ06058
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.45 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION3.0

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesGM124348
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesGM084210
German Research Foundation (DFG)United StatesAR1164/1-1
American Heart AssociationUnited StatesPOST34030308
Howard Hughes Medical Institute (HHMI)United States--

Revision History  (Full details and data files)

  • Version 1.0: 2022-02-09
    Type: Initial release
  • Version 1.1: 2022-03-16
    Changes: Database references
  • Version 1.2: 2022-03-30
    Changes: Database references