HIV integrase-LEDGF interaction screening by fragment linking using off-rate screening
Gorman, M.A., Parker, M.W.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Integrase | 163 | Human immunodeficiency virus 1 | Mutation(s): 0  EC: 2.7.7 | ||
UniProt | |||||
Find proteins for P12497 (Human immunodeficiency virus type 1 group M subtype B (isolate NY5)) Explore P12497  Go to UniProtKB:  P12497 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P12497 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 3 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
6I2 (Subject of Investigation/LOI) Query on 6I2 | L [auth B] | {2-[(3-{[4-(2-{[(3-{[3-(carboxymethyl)-5-methyl-1-benzofuran-2-yl]ethynyl}phenyl)methyl]amino}ethyl)piperazin-1-yl]methyl}phenyl)ethynyl]-5-methyl-1-benzofuran-3-yl}acetic acid C46 H43 N3 O6 PQJUNYNNRHSPEP-UHFFFAOYSA-N | |||
IOD Query on IOD | E [auth A], F [auth A], G [auth A], M [auth B], N [auth B] | IODIDE ION I XMBWDFGMSWQBCA-UHFFFAOYSA-M | |||
SO4 Query on SO4 | C [auth A] D [auth A] H [auth B] I [auth B] J [auth B] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 46.417 | α = 90 |
b = 46.417 | β = 90 |
c = 138.297 | γ = 90 |
Software Name | Purpose |
---|---|
PHENIX | refinement |
XDS | data reduction |
Aimless | data scaling |
PHENIX | phasing |
Funding Organization | Location | Grant Number |
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Not funded | -- |