Crystal structure of the Vitronectin hemopexin-like domain binding Calcium
Aleshin, A.E., Marassi, F.M.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Vitronectin | 204 | Homo sapiens | Mutation(s): 2  Gene Names: VTN | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P04004 (Homo sapiens) Explore P04004  Go to UniProtKB:  P04004 | |||||
PHAROS:  P04004 GTEx:  ENSG00000109072  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P04004 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 4 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
SO4 (Subject of Investigation/LOI) Query on SO4 | I [auth B] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L | |||
CA (Subject of Investigation/LOI) Query on CA | C [auth A], F [auth B] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N | |||
CL (Subject of Investigation/LOI) Query on CL | D [auth A], G [auth B] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M | |||
NA (Subject of Investigation/LOI) Query on NA | E [auth A], H [auth B] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 40.832 | α = 90 |
b = 125.575 | β = 119.25 |
c = 40.883 | γ = 90 |
Software Name | Purpose |
---|---|
REFMAC | refinement |
PDB_EXTRACT | data extraction |
XDS | data reduction |
Aimless | data scaling |
PHASER | phasing |
Funding Organization | Location | Grant Number |
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National Institutes of Health/Eunice Kennedy Shriver National Institute of Child Health & Human Development (NIH/NICHD) | United States | -- |