7RFP | pdb_00007rfp

Mouse GITR (mGITR) with DTA-1 Fab fragment


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.40 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report

Validation slider image for 7RFP

This is version 1.1 of the entry. See complete history

Literature

Therapeutic antibody activation of the glucocorticoid-induced TNF receptor by a clustering mechanism.

He, C.Maniyar, R.R.Avraham, Y.Zappasodi, R.Rusinova, R.Newman, W.Heath, H.Wolchok, J.D.Dahan, R.Merghoub, T.Meyerson, J.R.

(2022) Sci Adv 8: eabm4552-eabm4552

  • DOI: https://doi.org/10.1126/sciadv.abm4552
  • Primary Citation Related Structures: 
    7RFP

  • PubMed Abstract: 

    GITR is a TNF receptor, and its activation promotes immune responses and drives antitumor activity. The receptor is activated by the GITR ligand (GITRL), which is believed to cluster receptors into a high-order array. Immunotherapeutic agonist antibodies also activate the receptor, but their mechanisms are not well characterized. We solved the structure of full-length mouse GITR bound to Fabs from the antibody DTA-1. The receptor is a dimer, and each subunit binds one Fab in an orientation suggesting that the antibody clusters receptors. Binding experiments with purified proteins show that DTA-1 IgG and GITRL both drive extensive clustering of GITR. Functional data reveal that DTA-1 and the anti-human GITR antibody TRX518 activate GITR in their IgG forms but not as Fabs. Thus, the divalent character of the IgG agonists confers an ability to mimic GITRL and cluster and activate GITR. These findings will inform the clinical development of this class of antibodies for immuno-oncology.


  • Organizational Affiliation
    • Department of Physiology and Biophysics, Weill Cornell Medical College, New York, NY, USA.

Macromolecule Content 

  • Total Structure Weight: 264.37 kDa 
  • Atom Count: 5,532 
  • Modeled Residue Count: 1,114 
  • Deposited Residue Count: 2,390 
  • Unique protein chains: 3

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Tumor necrosis factor receptor superfamily member 18,Enhanced green fluorescent protein
A, B
490Mus musculusMuromegalovirus G4
This entity is chimeric
Mutation(s): 0 
Gene Names: Tnfrsf18GitreGFP
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for O35714 (Mus musculus)
Explore O35714 
Go to UniProtKB:  O35714
IMPC:  MGI:894675
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO35714
Sequence Annotations
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Reference Sequence
Find similar proteins by:|  3D Structure
Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
DTA-1 (heavy chain)C [auth H],
E [auth I]
465Mus musculusMutation(s): 0 
Find similar proteins by:|  3D Structure
Entity ID: 3
MoleculeChains  Sequence LengthOrganismDetailsImage
DTA-1 (light chain)D [auth L],
F [auth M]
240Mus musculusMutation(s): 0 

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.40 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Not funded--

Revision History  (Full details and data files)

  • Version 1.0: 2022-03-09
    Type: Initial release
  • Version 1.1: 2024-11-20
    Changes: Data collection, Structure summary