7RCJ

Crystal structure of ZnuA from Citrobacter koseri


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.15 Å
  • R-Value Free: 0.254 
  • R-Value Work: 0.217 
  • R-Value Observed: 0.219 

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This is version 1.1 of the entry. See complete history


Literature

Conformational flexibility in the zinc solute-binding protein ZnuA.

Yekwa, E.L.Serrano, F.A.Yukl, E.

(2022) Acta Crystallogr F Struct Biol Commun 78: 128-134

  • DOI: https://doi.org/10.1107/S2053230X22001662
  • Primary Citation of Related Structures:  
    7RCJ

  • PubMed Abstract: 

    Zinc is an essential metal for all kingdoms of life, making its transport across the cell membrane a critical function. In bacteria, high-affinity zinc import is accomplished by ATP-binding cassette (ABC) transporters, which rely on extracellular solute-binding proteins (SBPs) of cluster A-I to acquire the metal and deliver it to the membrane permease. These systems are important for survival and virulence, making them attractive targets for the development of novel antibiotics. Citrobacter koseri is an emerging pathogen with extensive antibiotic resistance. High-affinity zinc binding to the C. koseri cluster A-I SBP ZnuA has been characterized and the structure of the zinc-bound (holo) form has been determined by X-ray crystallography. Remarkably, despite 95% sequence identity to the ZnuA homologue from Salmonella enterica, C. koseri ZnuA exhibits a different zinc-coordination environment and a closed rather than an open conformation. Comparison with structures of another close ZnuA homologue from Escherichia coli suggests a surprisingly flexible conformational landscape that may be important for efficient zinc binding and/or delivery to the membrane permease.


  • Organizational Affiliation

    Department of Chemistry and Biochemistry, New Mexico State University, 1175 North Horseshoe Drive, Las Cruces, NM 88003, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
High-affinity zinc uptake system protein ZnuA
A, B, C, D, E
A, B, C, D, E, F
316Citrobacter koseri ATCC BAA-895Mutation(s): 0 
Gene Names: CKO_01106
UniProt
Find proteins for A8AFI6 (Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696))
Explore A8AFI6 
Go to UniProtKB:  A8AFI6
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA8AFI6
Sequence Annotations
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  • Reference Sequence
Small Molecules
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.15 Å
  • R-Value Free: 0.254 
  • R-Value Work: 0.217 
  • R-Value Observed: 0.219 
  • Space Group: P 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 122.246α = 90
b = 81.667β = 112.99
c = 126.555γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
Aimlessdata scaling
PDB_EXTRACTdata extraction
XDSdata reduction
PHASERphasing

Structure Validation

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Ligand Structure Quality Assessment 


Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United States1R01GM122819-01A1

Revision History  (Full details and data files)

  • Version 1.0: 2022-05-18
    Type: Initial release
  • Version 1.1: 2023-10-18
    Changes: Data collection, Refinement description