Crystal structure of MBD2 with DNA
Liu, K., Dong, A., Loppnau, P., Edwards, A.M., Arrowsmith, C.H., Min, J., Structural Genomics Consortium (SGC)To be published.
Experimental Data Snapshot
Starting Model: experimental
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wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Methyl-CpG-binding domain protein 2 | 79 | Homo sapiens | Mutation(s): 0  Gene Names: MBD2 | ![]() | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q9UBB5 (Homo sapiens) Explore Q9UBB5  Go to UniProtKB:  Q9UBB5 | |||||
PHAROS:  Q9UBB5 GTEx:  ENSG00000134046  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q9UBB5 | ||||
Sequence AnnotationsExpand | |||||
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Find similar nucleic acids by: Sequence | 3D Structure
Entity ID: 2 | |||||
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Molecule | Chains | Length | Organism | Image | |
DNA (5'-D(*GP*CP*CP*AP*A)-R(P*(5MC))-D(P*GP*TP*TP*GP*GP*C)-3') | 12 | synthetic construct | ![]() | ||
Sequence AnnotationsExpand | |||||
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Ligands 1 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
UNX Query on UNX | D [auth A], E [auth C] | UNKNOWN ATOM OR ION X |
Length ( Å ) | Angle ( ˚ ) |
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a = 37.599 | α = 90 |
b = 71.992 | β = 90 |
c = 126.107 | γ = 90 |
Software Name | Purpose |
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PHENIX | refinement |
Aimless | data scaling |
PDB_EXTRACT | data extraction |
PHASER | phasing |
XDS | data reduction |